Ontology Collection, GO:0016070y RNA metabolic process  excel   txt

#	accession	total	log(e)	description
1.	YBL076C	1306	-829.3	isoleucyl-tRNA synthetase, ILS1, protein biosynthesis, isoleucine-tRNA ligase activity, cytosol
2.	YOL004W	234	-795.7	transcription regulatory protein, SIN3, regulation of transcription from Pol II promoter, histone deacetylase activity, histone deacetylase complex
3.	YJL080C	1257	-780.9	required for maintenance of exact ploidy, SCP160, chromosome segregation, RNA binding, endoplasmic reticulum membrane
4.	YGL207W	674	-664.3	general chromatin factor, SPT16, chromatin remodeling, Pol II transcription elongation factor activity, nuclear chromatin
5.	YMR229C	981	-624.2	processing of pre-ribosomal RNA, RRP5, rRNA processing, RNA binding, nucleolus
6.	YGR094W	1274	-590	valyl-tRNA synthetase, VAS1, valyl-tRNA aminoacylation, valine-tRNA ligase activity, cytoplasm
7.	YER172C	113	-571.1	RNA helicase-related protein, BRR2, U2-type spliceosome conformational change to release U4 and U1, pre-mRNA splicing factor activity, snRNP U5
8.	YFL039C	1812	-517.5	actin, ACT1, cell wall organization and biogenesis, structural constituent of cytoskeleton, actin cortical patch (sensu Fungi)
9.	YPL160W	1231	-496.3	leucine--tRNA ligase, cytosolic, CDC60, leucyl-tRNA aminoacylation, leucine-tRNA ligase activity, cytoplasm
10.	YHR165C	137	-457.9	U5 snRNP protein, pre-mRNA splicing factor, PRP8, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
11.	YOR168W	738	-443.1	glutaminyl-tRNA synthetase, GLN4, glutaminyl-tRNA aminoacylation, glutamine-tRNA ligase activity, cytoplasm
12.	YGL245W	1329	-439.4	strong similarity to glutamine--tRNA ligase, GUS1, glutamyl-tRNA aminoacylation, glutamate-tRNA ligase activity, cytoplasm
13.	YGL092W	264	-433.5	nuclear pore protein, NUP145, mRNA-nucleus export, structural molecule activity, nuclear pore
14.	YPR033C	891	-428.6	histidine--tRNA ligase, mitochondrial, HTS1, histidyl-tRNA aminoacylation, histidine-tRNA ligase activity, cytoplasm
15.	YLR197W	1212	-425.7	involved in pre-rRNA processing, SIK1, rRNA modification, molecular_function unknown, nucleus
16.	YPR010C	773	-425	DNA-directed RNA polymerase I, 135 KD subunit, RPA135, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
17.	YBR020W	130	-424.6	galactokinase, GAL1, galactose metabolism, galactokinase activity, cellular_component unknown
18.	YGL253W	1550	-409.7	hexokinase II, HXK2, fructose metabolism, hexokinase activity, nucleus
19.	YDR341C	996	-399.8	arginyl-tRNA synthetase, cytosolic, protein biosynthesis, arginine-tRNA ligase activity, cytoplasm
20.	YJL109C	430	-399.7	U3 snoRNP protein, UTP10, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
21.	YOR204W	1238	-392.2	ATP-dependent RNA helicase, DED1, translational initiation, RNA helicase activity, cytoplasm
22.	YOR198C	1000	-391.5	maintenance of normal ploidy, BFR1, meiosis, RNA binding, polysome
23.	YNL247W	598	-390.7	cysteinyl-tRNA synthetase, cysteine metabolism, cysteine-tRNA ligase activity, cytoplasm
24.	YBR103W	71	-388.2	Sir4p interacting protein, SIF2, chromatin silencing at telomere, NAD-dependent histone deacetylase activity, nucleus
25.	YPR104C	64	-387.7	transcriptional activator of the forkhead/hnf3 family, FHL1, rRNA processing, transcription factor activity, nucleus
26.	YOR335C	1196	-381.6	alanyl-tRNA synthetase, cytosolic, ALA1, alanyl-tRNA aminoacylation, alanine-tRNA ligase activity, cytoplasm
27.	YGL173C	951	-376.5	multifunctional nuclease, KEM1, 35S primary transcript processing, recombinase activity, cytoplasm
28.	YIL078W	1180	-366.1	threonyl tRNA synthetase, cytosolic, THS1, protein biosynthesis, threonine-tRNA ligase activity, cytoplasm
29.	YLR442C	64	-361.5	silencing regulatory and DNA-repair protein, SIR3, chromatin silencing, histone binding, nucleolus
30.	YDR037W	1148	-351.1	lysyl-tRNA synthetase, cytosolic, KRS1, lysyl-tRNA aminoacylation, lysine-tRNA ligase activity, cytoplasm
31.	YOR341W	878	-349.3	DNA-directed RNA polymerase I, 190 KD alpha subunit, RPA190, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
32.	YLR438C-A	279	-347	Sm-like (Lsm) protein, LSM3, nuclear mRNA splicing, via spliceosome, U6 snRNA binding, snRNP U6
33.	YNL139C	145	-346.9	regulatory protein, RLR1, mRNA-nucleus export, nucleic acid binding, THO complex
34.	YBR121C	1097	-346.3	glycine--tRNA ligase, GRS1, glycyl-tRNA aminoacylation, glycine-tRNA ligase activity, cytoplasm
35.	YJL124C	276	-336.5	Sm-like (Lsm) protein, LSM1, rRNA processing, RNA cap binding, cytoplasmic mRNA processing body
36.	YDR138W	82	-335.2	hyperrecombination protein related to Top1p, HPR1, mRNA-nucleus export, nucleic acid binding, THO complex
37.	YBR055C	77	-330.3	snRNP(U4/U6)-associated splicing factor, PRP6, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, U4/U6 x U5 tri-snRNP complex
38.	YLR106C	694	-325.8	similarity to Kaposi^s sarcoma-associated herpes-like virus ORF73 homolog gene, MDN1, rRNA processing, ATPase activity, nucleus
39.	YOL021C	297	-323.7	3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA, DIS3, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
40.	YML063W	1471	-319.2	ribosomal protein S3a.e, RPS1B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
41.	YLR441C	1442	-319.2	ribosomal protein S3a.e, RPS1A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
42.	YGR264C	992	-317.1	methionyl-tRNA synthetase, MES1, methionyl-tRNA aminoacylation, methionine-tRNA ligase activity, cytoplasm
43.	YLR222C	271	-316.9	U3 snoRNP protein, UTP13, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
44.	YGR200C	240	-310.5	29 kDa subunit of elongator and elongating RNA polymerase II holoenzyme, ELP2, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
45.	YIL128W	92	-308	involved in NER repair and RNA polymerase II transcription, MET18, transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleoplasm
46.	YOR310C	1017	-303.5	required for pre-18S rRNA processing, NOP58, rRNA modification, molecular_function unknown, small nucleolar ribonucleoprotein complex
47.	YLR430W	146	-302.6	positive effector of tRNA-splicing endonuclease, SEN1, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleus
48.	YER171W	47	-302.3	DNA helicase/ATPase, RAD3, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
49.	YGR116W	526	-289.4	transcription elongation protein, SPT6, regulation of transcription, DNA-dependent, Pol II transcription elongation factor activity, nucleus
50.	YPL126W	300	-288.7	weak similarity to fruit fly TFIID subunit p85, NAN1, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
51.	YDL140C	693	-286.3	DNA-directed RNA polymerase II, 215 KD subunit, RPO21, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
52.	YKL185W	64	-286.1	negative regulator of HO transcription, ASH1, pseudohyphal growth, specific transcriptional repressor activity, nucleus
53.	YMR125W	349	-285.9	large subunit of the nuclear cap-binding protein complex CBC, STO1, nuclear mRNA splicing, via spliceosome, mRNA binding, commitment complex
54.	YAL021C	215	-285.5	transcriptional regulator, CCR4, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
55.	YDR365C	213	-281.5	Eighteen S rRNA Factor, nucleolar protein involved in pre-rRNA processing, ESF1, rRNA processing, RNA binding, nucleus
56.	YOR298C-A	639	-280.4	multiprotein bridging factor mediates GCN4-dependent transcriptional activation, MBF1, positive regulation of transcription from Pol II promoter, transcription coactivator activity, nucleus
57.	YLR167W	1539	-279.1	ubiquitin/40S small subunit ribosomal protein, RPS31, protein biosynthesis, structural constituent of ribosome, cytoplasm
58.	YDR023W	1088	-278.9	seryl-tRNA synthetase, cytosolic, SES1, seryl-tRNA aminoacylation, serine-tRNA ligase activity, cytoplasm
59.	YLR060W	952	-274.1	phenylalanyl-tRNA synthetase, alpha subunit, cytosolic, FRS1, phenylalanyl-tRNA aminoacylation, phenylalanine-tRNA ligase activity, phenylalanine-tRNA ligase complex
60.	YLR270W	430	-269.7	strong similarity to YOR173w, DCS1, deadenylylation-dependent decapping, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, cytoplasm
61.	YHR019C	1050	-269.1	asparaginyl-tRNA-synthetase, DED81, asparaginyl-tRNA aminoacylation, ATP binding, cytoplasm
62.	YOR151C	577	-263.7	DNA-directed RNA polymerase II, 140 kDa chain, RPB2, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
63.	YHR020W	1250	-258.7	strong similarity to human glutamyl-prolyl-tRNA synthetase and fruit fly multifunctional aminoacyl-tRNA synthetase, biological_process unknown, proline-tRNA ligase activity, cellular_component unknown
64.	YGR178C	285	-257.3	Pab1p interacting protein, PBP1, mRNA polyadenylylation, molecular_function unknown, cytoplasm
65.	YPR137W	119	-248.3	protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing, RRP9, rRNA modification, snoRNA binding, small nucleolar ribonucleoprotein complex
66.	YMR235C	678	-246.2	GTPase activating protein, RNA1, protein-nucleus import, Ran GTPase activator activity, nucleus
67.	YJL191W	1193	-244.9	40S small subunit ribosomal protein S14.e.B, RPS14B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
68.	YCR031C	1190	-244.6	40S Ribosomal protein S14.e, RPS14A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
69.	YGR090W	528	-241	similarity to PIR:T40678 hypothetical protein SPBC776.08c S. pombe, UTP22, processing of 20S pre-rRNA, snoRNA binding, nucleus
70.	YLR175W	776	-238.5	putative rRNA pseuduridine synthase, CBF5, rRNA modification, pseudouridylate synthase activity, small nucleolar ribonucleoprotein complex
71.	YOL145C	272	-236.7	required for G1 cyclin expression, CTR9, transcription from Pol II promoter, Pol II transcription elongation factor activity, nucleus
72.	YPL048W	966	-236.4	translation elongation factor eEF1 gamma homologue, CAM1, regulation of translational elongation, translation elongation factor activity, cytosolic ribosome (sensu Eukarya)
73.	YCR077C	160	-236.2	topoisomerase II-associated protein, PAT1, chromosome segregation, molecular_function unknown, cytosolic small ribosomal subunit (sensu Eukarya)
74.	YNL330C	123	-235.2	histone deacetylase B, RPD3, chromatin silencing at telomere, histone deacetylase activity, histone deacetylase complex
75.	YBL026W	522	-234.6	Sm-like (Lsm) protein, LSM2, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
76.	YNL182C	204	-232.9	weak similarity to S.pombe hypothetical protein, IPI3, 35S primary transcript processing, molecular_function unknown, nucleus
77.	YBR279W	146	-231.8	DNA-directed RNA polymerase II regulator, PAF1, RNA elongation from Pol II promoter, Pol II transcription elongation factor activity, nucleus
78.	YMR047C	113	-229.4	nuclear pore protein, NUP116, mRNA-nucleus export, structural molecule activity, nuclear pore
79.	YIL063C	222	-226.8	involved in nuclear protein export, YRB2, mRNA-nucleus export, structural molecule activity, nuclear pore
80.	YML010W	516	-226.5	transcription elongation protein, SPT5, regulation of transcription, DNA-dependent, Pol II transcription elongation factor activity, nucleus
81.	YDR190C	633	-226	RUVB-like protein, RVB1, regulation of transcription from Pol II promoter, ATPase activity, nucleus
82.	YPL090C	1465	-223.5	ribosomal protein S6.e, RPS6A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
83.	YBR181C	1465	-223.5	ribosomal protein S6.e, RPS6B, protein biosynthesis, structural constituent of ribosome, cytoplasm
84.	YDR028C	186	-220.7	regulatory subunit for protein phosphatase Glc7p, REG1, negative regulation of transcription from Pol II promoter, protein phosphatase type 1 activity, cytoplasm
85.	YOR230W	891	-215.8	transcriptional modulator, WTM1, regulation of meiosis, transcription corepressor activity, nucleus
86.	YBL024W	677	-213.1	tRNA (cytosine-5-)-methyltransferase, NCL1, tRNA methylation, tRNA (cytosine-5-)-methyltransferase activity, nucleus
87.	YBR245C	306	-213	strong similarity to D.melanogaster iswi protein, ISW1, chromatin remodeling, ATPase activity, nucleus
88.	YLR384C	462	-212.1	confers sensitivity to killer toxin, IKI3, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
89.	YPL235W	556	-208.8	RUVB-like protein, RVB2, regulation of transcription from Pol II promoter, ATPase activity, nucleus
90.	YDR172W	819	-207	eukaryotic peptide chain release factor GTP-binding subunit, SUP35, mRNA catabolism, deadenylylation-dependent, translation release factor activity, cytosol
91.	YOR173W	174	-206.7	strong similarity to YLR270w, DCS2, biological_process unknown, molecular_function unknown, cytoplasm
92.	YPR023C	52	-206.6	similarity to human hypothetical protein, EAF3, regulation of transcription from Pol II promoter, histone acetyltransferase activity, histone acetyltransferase complex
93.	YEL056W	85	-204.8	subunit of the major yeast histone acetyltransferase, HAT2, chromatin silencing at telomere, H3/H4 histone acetyltransferase activity, cytoplasm
94.	YFL022C	859	-202.9	phenylalanine--tRNA ligase beta chain, cytosolic, FRS2, phenylalanyl-tRNA aminoacylation, phenylalanine-tRNA ligase activity, cytoplasm
95.	YNL230C	31	-201.7	weak similarity to mammalian transcription elongation factor elongin A, ELA1, RNA elongation from Pol II promoter, transcriptional elongation regulator activity, transcription elongation factor complex
96.	YIL046W	64	-200.4	involved in regulation of sulfur assimilation genes and cell cycle progression, MET30, ubiquitin-dependent protein catabolism, protein binding, nuclear ubiquitin ligase complex
97.	YAL013W	39	-198.6	regulator of phospholipid metabolism, DEP1, regulation of transcription from Pol II promoter, molecular_function unknown, cellular_component unknown
98.	YLR196W	404	-198.4	similarity to human IEF SSP 9502 protein, PWP1, biological_process unknown, molecular_function unknown, cytoplasm
99.	YPR110C	565	-197.6	DNA-directed RNA polymerase I, III 40 KD subunit, RPC40, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
100.	YLR048W	1224	-196.9	40S ribosomal protein p40 homolog B, RPS0B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
101.	YOR209C	673	-194.9	nicotinate phosphoribosyltransferase, NPT1, chromatin silencing at telomere, nicotinate phosphoribosyltransferase activity, nucleus
102.	YNL308C	342	-194.2	similarity to S.pombe and C.elegans hypothetical proteins, KRI1, ribosome biogenesis, molecular_function unknown, nucleolus
103.	YGL174W	43	-194.1	weak similarity to C.elegans hypothetical protein R08D7.1, BUD13, bud site selection, molecular_function unknown, nucleus
104.	YER102W	1245	-193.7	ribosomal protein S8.e, RPS8B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
105.	YBL072C	1245	-193.7	ribosomal protein S8.e, RPS8A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
106.	YER006W	779	-192.1	Nuclear GTPase (involved in Ribosome biogenesis), NUG1, rRNA processing, GTPase activity, nucleus
107.	YBR084W	798	-191.1	C1-tetrahydrofolate synthase precursor, mitochondrial, MIS1, nucleobase, nucleoside, nucleotide and nucleic acid metabolism, formate-tetrahydrofolate ligase activity, mitochondrion
108.	YDL084W	1072	-187.8	probably involved in pre-mRNA splicing, SUB2, mRNA-nucleus export, protein binding, nucleus
109.	YMR106C	73	-186.8	component of DNA end-joining repair pathway, YKU80, chromatin assembly or disassembly, RNA binding, nuclear chromatin
110.	YOR229W	62	-186.6	transcriptional modulator, WTM2, regulation of meiosis, transcription corepressor activity, nucleus
111.	YDL014W	811	-186.5	fibrillarin, NOP1, rRNA modification, methyltransferase activity, nucleolus
112.	YML026C	1293	-185.9	ribosomal protein S18.e.c13, RPS18B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
113.	YDR450W	1293	-185.9	ribosomal protein S18.e.c4, RPS18A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
114.	YLR335W	462	-185.3	nuclear pore protein, NUP2, mRNA-nucleus export, structural molecule activity, nuclear pore
115.	YER125W	379	-184.2	hect domain E3 ubiquitin-protein ligase, RSP5, protein monoubiquitination, ubiquitin-protein ligase activity, ubiquitin ligase complex
116.	YCR093W	434	-184.1	nuclear protein, CDC39, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
117.	YGR214W	1231	-182.6	40S ribosomal protein p40 homolog A, RPS0A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
118.	YGR159C	764	-181.3	nuclear localization sequence binding protein, NSR1, rRNA processing, RNA binding, nucleus
119.	YDR516C	504	-179.5	strong similarity to glucokinase, EMI2, sporulation (sensu Fungi), molecular_function unknown, cytoplasm
120.	YPL093W	672	-179.3	similarity to M.jannaschii GTP-binding protein, NOG1, ribosome-nucleus export, GTPase activity, nucleolus
121.	YDR378C	363	-179	Sm-like (Lsm) protein, LSM6, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
122.	YBR095C	63	-178	weak similarity to hypothetical protein S. pombe, RXT2, conjugation with cellular fusion, molecular_function unknown, nucleus
123.	YER133W	611	-177	ser/thr phosphoprotein phosphatase 1, catalytic chain, GLC7, 35S primary transcript processing, protein phosphatase type 1 activity, nucleolus
124.	YDR473C	25	-176.6	essential splicing factor, PRP3, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, U4/U6 x U5 tri-snRNP complex
125.	YOL097C	674	-176.6	tryptophan--tRNA ligase, WRS1, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, cytoplasm
126.	YDR224C	967	-176.5	histone H2B, HTB1, chromatin assembly or disassembly, DNA binding, nuclear nucleosome
127.	YPL012W	544	-175.5	hypothetical protein, RRP12, processing of 20S pre-rRNA, molecular_function unknown, ribosome
128.	YDL112W	223	-175.5	tRNA (guanosine-2^-O-)-methyltransferase, TRM3, tRNA methylation, tRNA (guanosine) methyltransferase activity, cytoplasm
129.	YPL190C	166	-175.2	polyadenylated RNA-binding protein, NAB3, regulation of transcription from Pol II promoter, poly(A) binding, nucleus
130.	YMR143W	1270	-173.7	ribosomal protein S16.e, RPS16A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
131.	YDL083C	1270	-173.7	ribosomal protein S16.e, RPS16B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
132.	YBR088C	661	-170.9	Proliferating Cell Nuclear Antigen (PCNA), POL30, lagging strand elongation, DNA polymerase processivity factor activity, replication fork
133.	YFR001W	88	-170.8	weak similarity to rabbit triadin Spp41p, LOC1, ribosomal large subunit biogenesis, mRNA binding, nucleus
134.	YNL251C	174	-169.4	involved in regulation of nuclear pre-mRNA abundance, NRD1, transcription termination from Pol II promoter, poly(A)-independent, RNA binding, nucleus
135.	YFR037C	320	-168.4	subunit of the RSC complex, RSC8, chromatin remodeling, molecular_function unknown, nucleus
136.	YOL006C	165	-168.1	DNA topoisomerase I, TOP1, regulation of transcription from Pol II promoter, DNA topoisomerase type I activity, nucleus
137.	YEL055C	286	-168.1	DNA polymerase V, POL5, rRNA transcription, NOT DNA-directed DNA polymerase activity, nucleolus
138.	YBL004W	276	-167.8	weak similarity to Papaya ringspot virus polyprotein, UTP20, processing of 20S pre-rRNA, snoRNA binding, cytoplasm
139.	YPL031C	142	-167.7	cyclin-dependent protein kinase, PHO85, protein amino acid phosphorylation, cyclin-dependent protein kinase activity, nucleus
140.	YKR057W	906	-167.6	ribosomal protein S21.e, RPS21A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
141.	YPR133C	437	-166.3	similarity to C.elegans hypothetical protein, IWS1, RNA elongation from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
142.	YGL120C	592	-161	involved in spliceosome disassembly, PRP43, U2-type spliceosome dissembly, pre-mRNA splicing factor activity, spliceosome complex
143.	YLL008W	295	-160.5	RNA helicase of the DEAD box family, DRS1, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
144.	YBR189W	1074	-160.5	ribosomal protein S9.e.B, RPS9B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
145.	YJL136C	947	-159.7	40S small subunit ribosomal protein S21.e, RPS21B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
146.	YPL081W	1002	-159.5	ribosomal protein S9.e.A, RPS9A, protein biosynthesis, structural constituent of ribosome, cytoplasm
147.	YDR299W	269	-159.3	involved in protein transport steps at the Brefeldin A blocks, BFR2, ER to Golgi transport, molecular_function unknown, nucleolus
148.	YGL030W	1137	-156.3	60S large subunit ribosomal protein L30.e, RPL30, protein biosynthesis, structural constituent of ribosome, cytoplasm
149.	YPL212C	351	-155.5	tRNA-pseudouridine synthase 1, PUS1, tRNA modification, pseudouridylate synthase activity, nucleus
150.	YNL098C	570	-155.4	GTP-binding protein, RAS2, sporulation (sensu Fungi), GTPase activity, plasma membrane
151.	YOR319W	34	-154.5	essential yeast splicing factor, HSH49, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U2
152.	YIL069C	1127	-154.1	40S small subunit ribosomal protein S24.e, RPS24B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
153.	YER074W	1127	-154.1	40s small subunit ribosomal protein S24.e, RPS24A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
154.	YJR002W	241	-153.8	component of the U3 small nucleolar ribonucleoprotein, MPP10, rRNA modification, molecular_function unknown, nucleus
155.	YML069W	324	-153.4	protein that binds to DNA polymerase I (PolI), POB3, chromatin remodeling, chromatin binding, nucleus
156.	YKL095W	38	-151.5	similarity to C.elegans hypothetical proteins, YJU2, nuclear mRNA splicing, via spliceosome, molecular_function unknown, nucleus
157.	YOL123W	514	-151.5	CF Ib (RNA3^ Cleavage factor Ib), HRP1, mRNA polyadenylylation, RNA binding, cytoplasm
158.	YER120W	655	-150.8	required for inositol metabolism, SCS2, chromatin silencing at telomere, protein binding, endoplasmic reticulum
159.	YGL037C	688	-150	similarity to PIR:B70386 pyrazinamidase/nicotinamidase - Aquifex aeolicus, PNC1, chromatin silencing at telomere, nicotinamidase activity, cytoplasm
160.	YIL084C	28	-149	transcriptional regulator, SDS3, chromatin silencing, protein binding, histone deacetylase complex
161.	YKL172W	326	-148.7	required for pre-rRNA processing and ribosomal subunit assembly, EBP2, rRNA processing, molecular_function unknown, nucleolus
162.	YGR091W	18	-146.8	pre-mRNA splicing protein, PRP31, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, U4/U6 x U5 tri-snRNP complex
163.	YGL244W	163	-146.8	regulates DNA binding properties of TBP, RTF1, transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
164.	YGR185C	793	-144.9	tyrosyl-tRNA synthetase, TYS1, tyrosyl-tRNA aminoacylation, tyrosine-tRNA ligase activity, cytoplasm
165.	YMR288W	71	-143.9	component of a multiprotein splicing factor, HSH155, spliceosome assembly, mRNA binding, snRNP U2
166.	YDL042C	17	-143.5	silencing regulatory protein and DNA-repair protein, SIR2, chromatin silencing at telomere, histone deacetylase activity, nucleolus
167.	YDR496C	305	-142.9	similarity to hypothetical human and C.elegans proteins, PUF6, regulation of transcription, mating-type specific, specific transcriptional repressor activity, nucleus
168.	YER112W	352	-142.9	Sm-like (Lsm) protein, LSM4, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
169.	YJL098W	91	-142.8	Sit4p-associating protein, SAP185, G1/S transition of mitotic cell cycle, protein serine/threonine phosphatase activity, cytoplasm
170.	YDL060W	210	-142.5	similarity to C.elegans hypothetical protein, TSR1, rRNA processing, ribonucleoprotein binding, cytoplasm
171.	YGL105W	779	-141.4	protein with specific affinity for G4 quadruplex nucleic acids, ARC1, tRNA-nucleus export, tRNA binding, cytoplasm
172.	YBR247C	246	-139.8	effects N-glycosylation, ENP1, rRNA processing, snoRNA binding, nucleus
173.	YDR194C	276	-138.8	RNA helicase of the DEAD box family, mitochondrial, MSS116, RNA splicing, RNA helicase activity, mitochondrial matrix
174.	YHR084W	90	-137.9	transcriptional activator, STE12, pseudohyphal growth, transcription factor activity, nucleus
175.	YLR192C	510	-137.4	component of translation initiation factor eIF3, has similarity to human eIF3 p35 subunit, HCR1, protein biosynthesis, translation initiation factor activity, eukaryotic translation initiation factor 3 complex
176.	YHR111W	90	-137.2	conjugation system, E1-like protein, UBA4, protein modification, URM1 activating enzyme activity, cytoplasm
177.	YGL078C	576	-136.3	putative RNA helicase required for pre-rRNA processing, DBP3, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
178.	YPL217C	273	-136.3	GTP-binding protein, required for distinct steps of 40S ribosome biogenesis, BMS1, rRNA processing, GTP binding, cytoplasm
179.	YIL017C	13	-135.6	similarity to S. pombe SPAC26H5.04 protein of unknown function, VID28, negative regulation of gluconeogenesis, molecular_function unknown, cytoplasm
180.	YGL115W	216	-135.5	nuclear regulatory protein, SNF4, regulation of transcription from Pol II promoter, protein kinase activator activity, cytoplasm
181.	YLR182W	93	-135.3	transcription factor, SWI6, meiosis, protein binding, cytoplasm
182.	YOL041C	356	-135.1	weak similarity to M.sativa nuM1, hnRNP protein from C. tentans and D. melanogaster, murine/bovine poly(A) binding protein II, and Nsr1p, NOP12, rRNA metabolism, RNA binding, nucleolus
183.	YKL173W	135	-134.7	U5 snRNP-specific protein, SNU114, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, snRNP U5
184.	YMR290C	532	-134.7	helicase associated with Set1p, HAS1, rRNA processing, molecular_function unknown, nucleolus
185.	YOR061W	336	-134.7	casein kinase II alpha^ chain, CKA2, protein amino acid phosphorylation, protein kinase CK2 activity, protein kinase CK2 complex
186.	YHL015W	1242	-134.6	ribosomal protein, RPS20, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
187.	YIL126W	230	-134.2	subunit of the RSC complex, STH1, chromatin remodeling, ATPase activity, nucleus
188.	YOR308C	26	-134	component of U4/U6.U5 snRNP, SNU66, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
189.	YGR128C	292	-133.5	U3 snoRNP protein, UTP8, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
190.	YJL050W	379	-132.2	involved in nucleocytoplasmic transport of mRNA, MTR4, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
191.	YDL051W	413	-131.5	RNA binding protein, LHP1, tRNA processing, RNA binding, nucleus
192.	YNL112W	735	-125.7	ATP-dependent RNA helicase of DEAD box family, DBP2, mRNA catabolism, nonsense-mediated, RNA helicase activity, cytoplasm
193.	YMR080C	133	-124.6	nonsense-mediated mRNA decay protein, NAM7, mRNA catabolism, ATPase activity, cytoplasm
194.	YBR175W	20	-123.5	similarity to S.pombe beta-transducin, SWD3, chromatin silencing at telomere, chromatin binding, nuclear chromatin
195.	YDR216W	72	-122.2	zinc-finger transcription factor, ADR1, transcription, transcription factor activity, nucleus
196.	YNL016W	485	-122.1	major polyadenylated RNA-binding protein of nucleus and cytoplasm, PUB1, mRNA catabolism, nonsense-mediated, nucleic acid binding, cytoplasm
197.	YKR081C	182	-121.1	strong similarity to hypothetical protein S. pombe, RPF2, ribosomal large subunit assembly and maintenance, rRNA binding, nucleolus
198.	YOL139C	647	-120	translation initiation factor eIF4E, CDC33, translational initiation, translation initiation factor activity, cytoplasm
199.	YFL028C	125	-119.2	ATP-binding cassette transporter family member, CAF16, regulation of transcription, DNA-dependent, ATPase activity, coupled to transmembrane movement of substances, cytoplasm
200.	YBR048W	1312	-118.7	ribosomal protein S11.e.B, RPS11B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
201.	YDR025W	1312	-118.7	ribosomal protein S11.e, RPS11A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
202.	YDR225W	635	-116.8	histone H2A, HTA1, chromatin assembly or disassembly, DNA binding, nuclear nucleosome
203.	YOR243C	274	-116.4	similarity to M.jannaschii hypothetical protein MJ0588, PUS7, tRNA modification, pseudouridine synthase activity, nucleus
204.	YGL122C	180	-116.4	nuclear poly(A)-binding protein, NAB2, mRNA polyadenylylation, poly(A) binding, cytoplasm
205.	YAL032C	22	-115.9	pre-mRNA splicing factor, PRP45, positive regulation of transcription from Pol II promoter, transcriptional activator activity, nucleus
206.	YNL061W	446	-115.9	nucleolar protein, NOP2, rRNA processing, S-adenosylmethionine-dependent methyltransferase activity, nucleolus
207.	YJR066W	140	-115.9	phosphatidylinositol 3-kinase, TOR1, meiosis, protein binding, plasma membrane
208.	YGL172W	63	-115.3	nuclear pore protein, NUP49, mRNA-nucleus export, structural molecule activity, nuclear pore
209.	YER049W	321	-113.8	strong similarity to hypothetical S.pombe protein YER049W, biological_process unknown, molecular_function unknown, nucleus
210.	YDR432W	917	-113.4	nucleolar protein, NPL3, mRNA-nucleus export, mRNA binding, cytoplasm
211.	YPR189W	173	-112.3	antiviral protein, SKI3, mRNA catabolism, translation repressor activity, cytoplasm
212.	YMR091C	109	-111.8	nuclear protein localization factor, NPL6, protein-nucleus import, molecular_function unknown, nucleus
213.	YLR293C	1062	-110.5	GTP-binding protein of the ras superfamily, GSP1, rRNA processing, GTPase activity, cytoplasm
214.	YKR036C	52	-110.2	CCR4 associated factor, CAF4, regulation of transcription, DNA-dependent, protein binding, CCR4-NOT complex
215.	YHR196W	215	-109.7	U3 snoRNP protein, UTP9, processing of 20S pre-rRNA, snoRNA binding, nucleus
216.	YLL036C	169	-109.3	non-snRNP sliceosome component required for DNA repair, PRP19, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, cytoplasm
217.	YMR061W	103	-109	component of pre-mRNA 3^-end processing factor CF I, RNA14, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, nucleus
218.	YMR049C	445	-108	weak similarity to A.thaliana PRL1 protein, ERB1, rRNA processing, molecular_function unknown, nucleus
219.	YDL031W	192	-107.9	putative RNA helicase involved in ribosome biogenesis, DBP10, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
220.	YPR112C	330	-107.6	similarity to RNA-binding proteins, MRD1, 35S primary transcript processing, snoRNA binding, nucleolus
221.	YDR064W	1167	-107.1	ribosomal protein, RPS13, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
222.	YIL021W	198	-106.9	DNA-directed RNA-polymerase II, 45 kDa, RPB3, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
223.	YDL160C	587	-106.6	putative RNA helicase of the DEAD box family, DHH1, deadenylylation-dependent decapping, protein binding, cytoplasm
224.	YML049C	103	-106.2	involved in RNA splicing and ER to Golgi transport, RSE1, nuclear mRNA splicing, via spliceosome, U2 snRNA binding, snRNP U2
225.	YGR103W	506	-105.7	pescadillo homolg, required for essential steps leading to synthesis of 60S ribosomal subunits, NOP7, processing of 20S pre-rRNA, molecular_function unknown, nucleus
226.	YDR324C	188	-105.3	U3 snoRNP protein, UTP4, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
227.	YKL014C	242	-105.1	similarity to hypothetical protein SPCC14G10.02 S. pombe, URB1, rRNA processing, molecular_function unknown, nucleolus
228.	YPL001W	80	-104.9	histone acetyltransferase subunit, HAT1, chromatin silencing at telomere, H3/H4 histone acetyltransferase activity, cytoplasm
229.	YER146W	278	-104.1	Sm-like (Lsm) protein, LSM5, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
230.	YEL026W	645	-102.8	component of the U4/U6.U5 snRNP, SNU13, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, nucleolus
231.	YLR117C	16	-102.4	strong similarity to Drosophila putative cell cycle control protein crn, CLF1, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
232.	YGL112C	181	-102.4	TFIID and SAGA subunit, TAF6, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, SAGA complex
233.	YDR280W	106	-102	rRNA processing protein, RRP45, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
234.	YIL035C	122	-101.2	casein kinase II, catalytic alpha chain, CKA1, protein amino acid phosphorylation, protein kinase CK2 activity, protein kinase CK2 complex
235.	YNL118C	249	-100.8	suppressor protein of a yeast pet mutant, DCP2, mRNA catabolism, mRNA binding, cytoplasm
236.	YKR028W	143	-100.6	Sit4p-associated protein, SAP190, G1/S transition of mitotic cell cycle, protein serine/threonine phosphatase activity, cytoplasm
237.	YNL113W	426	-100.5	DNA-directed RNA polymerase I, III 16 KD subunit, RPC19, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
238.	YPR016C	329	-99.9	translation initiation factor 6 (eIF6), TIF6, ribosomal large subunit biogenesis, molecular_function unknown, cytoplasm
239.	YOL142W	73	-99.6	protein involved in ribosomal RNA processing, component of the exosome complex responsible for 3^ end processing and degradation of many RNA species, RRP40, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
240.	YMR247C	140	-98.1	similarity to hypothetical protein S. pombe, biological_process unknown, molecular_function unknown, cellular_component unknown
241.	YDL098C	16	-98	Putative RNA binding zinc finger protein, SNU23, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
242.	YDL047W	128	-98	ser/thr protein phosphatase, SIT4, cell wall organization and biogenesis, protein serine/threonine phosphatase activity, cytoplasm
243.	YPR178W	33	-96.9	U4/U6 snRNP 52 KD protein, PRP4, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, U4/U6 x U5 tri-snRNP complex
244.	YOR116C	201	-96.7	DNA-directed RNA polymerase III, 160 KD subunit, RPO31, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
245.	YML065W	41	-95.8	origin recognition complex, 104 KD subunit, ORC1, DNA replication initiation, ATPase activity, nuclear origin of replication recognition complex
246.	YKL058W	112	-95.6	TFIIA subunit (transcription initiation factor), 13.5 kD, TOA2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIA complex
247.	YHR021C	419	-94.5	ribosomal protein S27.e, RPS27B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
248.	YKL156W	419	-94.5	ribosomal protein S27.e, RPS27A, protein biosynthesis, structural constituent of ribosome, cytoplasm
249.	YDR120C	343	-94.1	N2, N2-dimethylguanine tRNA methyltransferase, TRM1, tRNA methylation, tRNA (guanine-N2-)-methyltransferase activity, mitochondrion
250.	YGL019W	157	-93.9	casein kinase II, beta subunit, CKB1, protein amino acid phosphorylation, protein kinase CK2 activity, protein kinase CK2 complex
251.	YLR129W	211	-93.8	Dom34p-interacting protein, DIP2, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
252.	YNL002C	246	-92	strong similarity to mammalian ribosomal L7 proteins, RLP7, ribosomal large subunit biogenesis, rRNA binding, nucleolus
253.	YMR219W	116	-92	Establishes Silent Chromatin, ESC1, chromatin silencing at telomere, molecular_function unknown, nucleus
254.	YDL080C	748	-91.3	positive regulation factor of thiamin metabolism, THI3, thiamin biosynthesis, transcriptional activator activity, nucleus
255.	YPL213W	24	-90	U2 A^ snRNP protein, LEA1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, cytoplasm
256.	YOR251C	289	-89.6	similarity to thiosulfate sulfurtransferases, biological_process unknown, thiosulfate sulfurtransferase activity, cytoplasm
257.	YKL009W	388	-89.5	mRNA turnover 4, MRT4, rRNA processing, molecular_function unknown, nucleus
258.	YDR087C	170	-89.3	involved in processing rRNA precursor species to mature rRNAs, RRP1, rRNA processing, molecular_function unknown, nucleus
259.	YHR087W	205	-88.6	weak similarity to PIR:T50363 hypothetical protein SPBC21C3.19 S.pombe, biological_process unknown, molecular_function unknown, cytoplasm
260.	YDL153C	172	-88.4	involved in silencing, SAS10, processing of 20S pre-rRNA, snoRNA binding, nucleus
261.	YER029C	45	-87.2	associated with U1 snRNP as part of the Sm-core that is common to all spliceosomal snRNPs, SMB1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
262.	YNL103W	88	-86.3	transcriptional activator of sulfur metabolism, MET4, positive regulation of transcription from Pol II promoter, transcription coactivator activity, nucleus
263.	YLR276C	221	-85.6	similarity to YDL031w, Mak5p and RNA helicases, DBP9, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
264.	YJL087C	125	-84.8	tRNA ligase, TRL1, tRNA splicing, RNA ligase (ATP) activity, nucleoplasm
265.	YHR099W	203	-84.1	component of the Ada-Spt transcriptional regulatory complex, TRA1, regulation of transcription from Pol II promoter, histone acetyltransferase activity, histone acetyltransferase complex
266.	YDR243C	67	-82.6	pre-mRNA splicing factor RNA helicase of DEAD box family, PRP28, cis assembly of U2-type pre-catalytic spliceosome, pre-mRNA splicing factor activity, spliceosome complex
267.	YGL097W	334	-80.9	GDP/GTP exchange factor for Gsp1p/Gsp2p, SRM1, rRNA-nucleus export, signal transducer activity, nucleus
268.	YHR072W-A	122	-80.9	nucleolar rRNA processing protein, NOP10, rRNA modification, RNA binding, small nuclear ribonucleoprotein complex
269.	YLR288C	17	-80.6	G2-specific checkpoint protein, MEC3, chromatin silencing at telomere, DNA binding, nucleus
270.	YNL288W	76	-80.5	strong similarity to C.elegans hypothetical protein, CAF40, regulation of transcription from Pol II promoter, molecular_function unknown, CCR4-NOT complex
271.	YIL038C	180	-80.5	general negative regulator of transcription, subunit 3, NOT3, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
272.	YHR030C	162	-80.3	ser/thr protein kinase of MAP kinase family, SLT2, cell wall organization and biogenesis, MAP kinase activity, cytoplasm
273.	YPL129W	267	-80	TFIIF subunit (transcription initiation factor), 30 kD, TAF14, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
274.	YDR398W	122	-79.9	U3 snoRNP protein, UTP5, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
275.	YDR174W	484	-79.7	Non-histone protein, HMO1, plasmid maintenance, RNA polymerase I transcription factor activity, cytoplasm
276.	YPL204W	115	-79.7	casein kinase I, ser/thr/tyr protein kinase, HRR25, DNA repair, protein kinase activity, nucleus
277.	YPR132W	943	-79.4	40S small subunit ribosomal protein S23.e, RPS23B, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
278.	YGR118W	943	-79.4	40S small subunit ribosomal protein S23.e, RPS23A, protein biosynthesis, structural constituent of ribosome, cytosolic small ribosomal subunit (sensu Eukarya)
279.	YJL010C	126	-79	weak similarity to C.elegans hypothetical protei ZK792.5, rRNA processing, RNA binding, nucleus
280.	YBR160W	260	-78.9	cyclin-dependent protein kinase, CDC28, protein amino acid phosphorylation, cyclin-dependent protein kinase activity, cytoplasm
281.	YJL076W	328	-78.8	required for rDNA silencing and nucleolar integrity, NET1, chromatin silencing at ribosomal DNA, ribosomal DNA (rDNA) binding, nucleolus
282.	YHR088W	94	-78.6	similarity to hypothetical protein YNL075w, RPF1, ribosomal large subunit assembly and maintenance, rRNA primary transcript binding, nucleolus
283.	YNL248C	264	-77.5	DNA-directed RNA polymerase A (I) chain, 46 kDa, RPA49, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
284.	YOR039W	130	-76.9	casein kinase II beta^ chain, CKB2, protein amino acid phosphorylation, protein kinase CK2 activity, protein kinase CK2 complex
285.	YDR267C	48	-76.6	weak similarity to human TAFII100 and other WD-40 repeat containing proteins, biological_process unknown, molecular_function unknown, cytoplasm
286.	YOR224C	252	-76.3	DNA-directed RNA polymerase I, II, III 16 KD subunit, RPB8, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
287.	YJR060W	222	-75.6	centromere binding factor 1, CBF1, methionine biosynthesis, DNA binding, nucleus
288.	YHR041C	52	-75.2	DNA-directed RNA polymerase II holoenzyme and Kornberg^s mediator (SRB) subcomplex subunit, SRB2, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
289.	YPL207W	178	-74.3	similarity to hypthetical proteins from A. fulgidus, M. thermoautotrophicum and M. jannaschii, biological_process unknown, molecular_function unknown, endoplasmic reticulum
290.	YKR002W	162	-74.1	poly(A) polymerase, PAP1, mRNA polyadenylylation, polynucleotide adenylyltransferase activity, nucleoplasm
291.	YPR143W	119	-73.8	hypothetical protein, biological_process unknown, molecular_function unknown, nucleus
292.	YJL033W	170	-73.2	can suppress the U14 snoRNA rRNA processing function, HCA4, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
293.	YLR071C	74	-73.1	DNA-directed RNA polymerase II holoenzyme subunit, RGR1, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
294.	YDL111C	96	-72.6	rRNA processing protein, RRP42, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
295.	YOR048C	178	-72.3	5^-3^ exoribonuclease, RAT1, 35S primary transcript processing, 5'-3' exoribonuclease activity, nucleus
296.	YCR057C	206	-72.1	periodic tryptophan protein, PWP2, establishment of cell polarity (sensu Saccharomyces), snoRNA binding, cytoplasm
297.	YML093W	175	-72.1	similarity to P.falciparum liver stage antigen LSA-1, UTP14, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
298.	YOR340C	209	-71.3	DNA-directed RNA polymerase I, 36 KD subunit, RPA43, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
299.	YAL043C	116	-71.3	pre-tRNA processing protein / PF I subunit, PTA1, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
300.	YMR263W	36	-71.2	subunit of the histone deacetylase B complex, SAP30, chromatin silencing at telomere, histone deacetylase activity, histone deacetylase complex
301.	YLR398C	189	-70.4	antiviral protein and putative helicase, SKI2, mRNA catabolism, RNA helicase activity, cytoplasm
302.	YNL163C	106	-69.9	translation elongation factor eEF4, RIA1, ribosome biogenesis, translation elongation factor activity, cytoplasm
303.	YKL205W	155	-69.6	pre-tRNA splicing protein, LOS1, tRNA-nucleus export, tRNA binding, nuclear matrix
304.	YNL216W	251	-69.2	DNA-binding protein with repressor and activator activity, RAP1, chromatin silencing at telomere, DNA binding, nucleus
305.	YOR145C	179	-69.1	strong similarity to hypothtical S. pombe protein and to hypothetical C. elegans protein, PNO1, rRNA processing, unfolded protein binding, nucleus
306.	YLR409C	179	-69	strong similarity to S. pombe beta-transducin, UTP21, processing of 20S pre-rRNA, snoRNA binding, nucleus
307.	YMR213W	41	-68.9	required during G2/M transition, CEF1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, spliceosome complex
308.	YLR002C	230	-68.5	required for maturation and intranuclear transport of pre-ribosomes, NOC3, rRNA processing, protein binding, nucleus
309.	YCL054W	180	-68.5	required for ribosome synthesis, putative methylase, SPB1, processing of 27S pre-rRNA, S-adenosylmethionine-dependent methyltransferase activity, nucleus
310.	YJR063W	182	-68.5	DNA-directed RNA polymerase I, 13.7 KD subunit, RPA12, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
311.	YLR113W	276	-67.8	ser/thr protein kinase of MAP kinase (MAPK) family, HOG1, protein amino acid phosphorylation, MAP kinase activity, cytoplasm
312.	YLR449W	426	-67.6	nucleolar peptidylprolyl cis-trans isomerase (PPIase), FPR4, biological_process unknown, peptidyl-prolyl cis-trans isomerase activity, nucleus
313.	YHR089C	563	-67.4	nucleolar rRNA processing protein, GAR1, rRNA modification, RNA binding, nucleolus
314.	YDL108W	9	-67	cyclin-dependent ser/thr protein kinase, KIN28, protein amino acid phosphorylation, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
315.	YKR008W	118	-66.5	member of RSC complex, which remodels the structure of chromatin, RSC4, chromatin remodeling, molecular_function unknown, nucleosome remodeling complex
316.	YLR055C	77	-66.2	transcriptional adaptor or co-activator, SPT8, histone acetylation, transcription cofactor activity, nucleus
317.	YDR303C	141	-66	similarity to transcriptional regulator proteins, RSC3, regulation of transcription, DNA-dependent, DNA binding, nucleus
318.	YJL140W	121	-65.8	DNA-directed RNA polymerase II, 32 kDa subunit, RPB4, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
319.	YDR416W	21	-65.4	synthetic lethal with CDC40, SYF1, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
320.	YJL069C	122	-65.3	similarity to C.elegans hypothetical protein, UTP18, processing of 20S pre-rRNA, snoRNA binding, nucleolus
321.	YCR063W	5	-65.2	strong similarity to Xenopus G10 and human edg-2 protein, BUD31, bud site selection, molecular_function unknown, nucleus
322.	YDR227W	67	-64.9	silencing regulatory and DNA-repair protein, SIR4, chromatin silencing, histone binding, nuclear telomere cap complex
323.	YNL236W	97	-64.8	global regulator protein, SIN4, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
324.	YJL176C	160	-64.2	transcription regulatory protein, SWI3, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
325.	YER164W	134	-64.2	transcriptional regulator, CHD1, chromatin remodeling, ATPase activity, transcription elongation factor complex
326.	YHR148W	93	-64	component of the U3 small nucleolar ribonucleoprotein, IMP3, rRNA modification, snoRNA binding, small nucleolar ribonucleoprotein complex
327.	YOL005C	135	-63.6	DNA-directed RNA polymerase II subunit, 13.6 kD, RPB11, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
328.	YER082C	154	-63.2	U3 snoRNP protein, UTP7, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
329.	YHR197W	206	-63.1	weak similarity to PIR:T22172 hypothetical protein F44E5.2 C. elegans, RIX1, 35S primary transcript processing, molecular_function unknown, nucleus
330.	YGR195W	33	-62.8	3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA, SKI6, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
331.	YPL266W	178	-62.7	rRNA (adenine-N6, N6-)-dimethyltransferase, DIM1, rRNA modification, rRNA (adenine-N6, N6-)-dimethyltransferase activity, nucleolus
332.	YGR186W	141	-62.5	TFIIF subunit (transcription initiation factor), 105 kD, TFG1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIF complex
333.	YOR304W	109	-62.5	strong similarity to Drosophila ISW1 and human Snf2p homolog, ISW2, chromatin remodeling, ATPase activity, nucleus
334.	YDL209C	30	-62.3	involved in mRNA splicing, CWC2, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
335.	YLR186W	291	-62	strong similarity to S.pombe hypothetical protein C18G6.07C, EMG1, processing of 20S pre-rRNA, snoRNA binding, cytoplasm
336.	YJL203W	5	-61.7	pre-mRNA splicing factor, PRP21, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U2
337.	YPR101W	9	-61.4	splicing factor, SNT309, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
338.	YDR449C	90	-61.3	U3 snoRNP protein, UTP6, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
339.	YHR121W	112	-60.6	weak similarity to C.elegans hypothetical protein, LSM12, RNA metabolism, RNA binding, cytoplasm
340.	YCL017C	223	-60.5	regulates Iron-Sulfur cluster proteins, cellular Iron uptake, andIron distribution, NFS1, iron ion homeostasis, cystathionine gamma-lyase activity, mitochondrion
341.	YMR284W	20	-60.1	high-affinity DNA-binding protein, YKU70, chromatin assembly or disassembly, RNA binding, nuclear membrane
342.	YPL043W	242	-60	nucleolar protein, NOP4, rRNA processing, RNA binding, nucleolus
343.	YLL029W	204	-59.8	similarity to M.jannaschii X-Pro dipeptidase and S.pombe hypothetical protein, biological_process unknown, molecular_function unknown, cytoplasm
344.	YPR082C	11	-59.6	required for mitosis, DIB1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
345.	YJR050W	8	-59.2	pre-mRNA splicing factor, ISY1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, spliceosome complex
346.	YGL151W	137	-59.1	negative transcription regulator from artifical reporters, NUT1, regulation of transcription from Pol II promoter, molecular_function unknown, nucleus
347.	YPL151C	22	-58.9	strong similarity to A.thaliana PRL1 and PRL2 proteins, PRP46, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
348.	YGR047C	55	-58.8	TFIIIC (transcription initiation factor) subunit, 131 kD, TFC4, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
349.	YPR070W	36	-58.8	component of RNA polymerase II holoenzyme and mediator subcomplex, MED1, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
350.	YML062C	75	-58.2	mitochondrial fusion target protein, MFT1, mRNA-nucleus export, nucleic acid binding, THO complex
351.	YGL043W	228	-57.8	TFIIS (transcription elongation factor), DST1, meiotic recombination, positive transcription elongation factor activity, nucleoplasm
352.	YKL025C	73	-56.8	component of the Pab1p-dependent poly(A) ribonuclease, PAN3, DNA repair, poly(A)-specific ribonuclease activity, cytoplasm
353.	YGL232W	158	-56.8	weak similarity to P.falciparum dihydropteroate synthase, TAN1, tRNA modification, RNA binding, cytoplasm
354.	YER168C	96	-56.7	tRNA nucleotidyltransferase, CCA1, tRNA modification, tRNA adenylyltransferase activity, cytoplasm
355.	YPR072W	142	-56.5	component of the NOT protein complex, NOT5, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
356.	YPL086C	126	-55.9	subunit of elongator/RNAPII holoenzyme with histone acetylase activity, ELP3, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
357.	YER126C	145	-55.9	involved in biogenesis of ribosomal large subunit, NSA2, ribosomal large subunit biogenesis, molecular_function unknown, nucleus
358.	YDL043C	26	-55.2	pre-mRNA splicing factor, PRP11, spliceosome assembly, RNA binding, snRNP U2
359.	YLR275W	43	-55.2	U1 snRNP protein of the Sm class, SMD2, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
360.	YIR001C	94	-55	similarity to D.melanogaster RNA binding protein, SGN1, mRNA metabolism, poly(A) binding, cytoplasm
361.	YLR274W	123	-54.6	cell division control protein, CDC46, DNA replication initiation, chromatin binding, cytoplasm
362.	YOR123C	185	-54.6	extremely hydrophilic protein, LEO1, transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
363.	YBR154C	373	-54.5	DNA-directed RNA polymerase I, II, III 25 KD subunit, RPB5, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
364.	YDL208W	237	-54.2	nucleolar rRNA processing protein, NHP2, rRNA modification, RNA binding, small nuclear ribonucleoprotein complex
365.	YER063W	286	-54	weak similarity to human heterogeneous ribonuclear particle protein U, THO1, transcription, DNA-dependent, molecular_function unknown, nucleus
366.	YDL148C	190	-53.6	nuclear and nucleolar protein with possible role in ribosome biogenesis, NOP14, processing of 20S pre-rRNA, snoRNA binding, nucleus
367.	YGR258C	39	-53.4	structure-specific nuclease of the nucleotide excision repairosome, RAD2, nucleotide-excision repair, DNA incision, 3'-to lesion, single-stranded DNA specific endodeoxyribonuclease activity, nucleotide excision repair factor 3 complex
368.	YMR093W	234	-53.1	weak similarity to Pwp2p, UTP15, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
369.	YLR435W	48	-52.9	Twenty S rRNA accumulation protein, TSR2, processing of 20S pre-rRNA, molecular_function unknown, cytoplasm
370.	YHR065C	192	-52.9	required for maturation of the 35S primary transcript, RRP3, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
371.	YCL059C	162	-52.9	required for 40S ribosome biogenesis, KRR1, rRNA processing, molecular_function unknown, nucleolus
372.	YDL201W	194	-52.7	part of complex required for 7-methylguanosine modification , TRM8, tRNA methylation, protein binding, nucleus
373.	YER111C	55	-52.5	transcription factor, SWI4, G1/S transition of mitotic cell cycle, transcription factor activity, nucleus
374.	YDR165W	259	-52.3	weak similarity to hypothetical C.elegans protein, TRM82, tRNA methylation, protein binding, nucleus
375.	YIR005W	24	-52.3	similarity to RNA-binding proteins, IST3, spliceosome assembly, pre-mRNA splicing factor activity, snRNP U2
376.	YPR129W	167	-51.7	suppressor of clathrin deficiency, SCD6, RNA metabolism, RNA binding, cytoplasm
377.	YPL146C	101	-51.7	weak similarity to myosin heavy chain proteins, biological_process unknown, molecular_function unknown, nucleus
378.	YKL018W	59	-51.7	similarity to C.elegans hypothetical protein, SWD2, histone methylation, histone lysine N-methyltransferase activity (H3-K4 specific), mRNA cleavage and polyadenylation specificity factor complex
379.	YKL112W	84	-51	ARS-binding factor, ABF1, DNA replication, DNA binding, nuclear chromatin
380.	YCR035C	53	-50.5	rRNA processing protein, RRP43, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
381.	YIL061C	12	-50.5	U1 small nuclear ribonucleoprotein, SNP1, nuclear mRNA splicing, via spliceosome, mRNA binding, snRNP U1
382.	YOL012C	358	-50.3	evolutionarily conserved member of the histone H2A F/Z family of histone variants, HTZ1, regulation of transcription from Pol II promoter, chromatin binding, nuclear chromatin
383.	YDR310C	112	-50.2	suppressor of SIR mutations, SUM1, chromatin silencing at telomere, transcriptional repressor activity, nucleus
384.	YPL016W	98	-48.7	component of SWI/SNF global transcription activator complex, SWI1, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
385.	YPL127C	279	-48.5	histone H1 protein, HHO1, regulation of transcription, DNA-dependent, DNA binding, nucleus
386.	YGL070C	79	-48.2	DNA-directed RNA polymerase II, 14.2 KD subunit, RPB9, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
387.	YDL030W	90	-48.2	pre-mRNA splicing factor (snRNA-associated protein), PRP9, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U2
388.	YCR052W	91	-48.2	subunit of the RSC complex, RSC6, chromatin remodeling, molecular_function unknown, nucleosome remodeling complex
389.	YBR060C	48	-47.8	origin recognition complex, 72 kDa subunit, ORC2, DNA replication initiation, DNA replication origin binding, nuclear origin of replication recognition complex
390.	YLR418C	160	-46.7	DNA-directed RNA polymerase II accessory protein, CDC73, RNA elongation from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
391.	YNL147W	40	-46.7	Sm-like (Lsm) protein, LSM7, nuclear mRNA splicing, via spliceosome, U6 snRNA binding, snRNP U6
392.	YLR403W	32	-46.1	zinc finger protein, SFP1, regulation of cell size, transcription factor activity, nucleus
393.	YBR049C	131	-46.1	transcription factor, REB1, regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
394.	YGL029W	2	-45.8	Coiled-coil protein, may play a role in ribosome biogenesis, CGR1, rRNA processing, molecular_function unknown, nucleolus
395.	YPR187W	106	-45.6	DNA-directed RNA polymerase I, II, III 18 KD subunit, RPO26, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
396.	YOR294W	212	-45.5	regulator of ribosome synthesis, RRS1, rRNA processing, molecular_function unknown, nucleus
397.	YPR052C	199	-45.4	nonhistone chromosomal protein related to mammalian HMG1, NHP6A, regulation of transcription from Pol II promoter, chromatin binding, nuclear chromatin
398.	YLR147C	45	-45.3	spliceosomal snRNA-associated Sm core protein required for pre-mRNA splicing, SMD3, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
399.	YML127W	125	-45.2	weak similarity to Los1p, RSC9, regulation of transcription from Pol II promoter, chromatin binding, chromatin remodeling complex
400.	YLR321C	83	-45.1	subunit of the RSC complex, SFH1, chromatin remodeling, protein binding, nucleosome remodeling complex
401.	YMR070W	21	-45.1	high-copy suppressor of MOT1-SPT3 synthetic lethality, MOT3, transcription, DNA binding, nucleus
402.	YLR005W	53	-45.1	TFIIH subunit (transcription initiation factor), factor B, SSL1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
403.	YNL206C	65	-44.5	similarity to structure-specific recognition proteins, RTT106, negative regulation of DNA transposition, molecular_function unknown, nucleus
404.	YGR095C	71	-44.5	involved in rRNA processing, RRP46, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
405.	YPR190C	149	-43.9	DNA-directed RNA polymerase III, 82 KD subunit, RPC82, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
406.	YOR207C	251	-43.6	DNA-directed RNA polymerase III, 130 KD subunit, RET1, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
407.	YBR089C-A	127	-43.5	nonhistone chromosomal protein, NHP6B, regulation of transcription from Pol II promoter, chromatin binding, nuclear chromatin
408.	YLR016C	10	-43.1	weak similarity to TRCDSEMBLNEW:AK022615_1 unnamed ORF; Homo sapiens, biological_process unknown, molecular_function unknown, cytoplasm
409.	YMR033W	160	-43.1	Actin-related protein, ARP9, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleus
410.	YGR275W	71	-42.9	Regulator of Ty1 Transposition, RTT102, biological_process unknown, molecular_function unknown, nucleus
411.	YJR017C	162	-42.8	processing/termination factor 1, ESS1, negative regulation of transcription from Pol II promoter, peptidyl-prolyl cis-trans isomerase activity, nucleus
412.	YKR042W	97	-42.8	involved in the aging process, UTH1, mitochondrion organization and biogenesis, molecular_function unknown, cell wall (sensu Fungi)
413.	YER088C	101	-42.6	involved in derepression of telomeric silencing, DOT6, regulation of transcription from Pol II promoter, molecular_function unknown, cytoplasm
414.	YGR163W	38	-42.5	similarity to human ragA protein and Gtr1p, GTR2, biological_process unknown, GTPase activity, cytoplasm
415.	YJR022W	75	-42.3	splicing factor, LSM8, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, nucleus
416.	YER161C	35	-42.3	multifunctional HMG-like chromatin protein, SPT2, negative regulation of transcription from Pol II promoter, DNA binding, nucleus
417.	YDR088C	21	-41.9	pre-mRNA splicing factor affecting 3^ splice site choice, SLU7, nuclear mRNA splicing, via spliceosome, protein binding, spliceosome complex
418.	YOL115W	38	-41.8	topoisomerase I-related protein, TRF4, mitotic sister chromatid cohesion, DNA-directed DNA polymerase activity, nucleus
419.	YDL074C	131	-41.8	weak similarity to spindle pole body protein NUF1, BRE1, chromatin silencing at telomere, ubiquitin-protein ligase activity, nucleus
420.	YFR005C	15	-41.4	SnRNP assembly defective, SAD1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, nucleus
421.	YLR033W	81	-41.3	hypothetical protein, RSC58, chromatin remodeling, molecular_function unknown, RSC complex
422.	YPL030W	89	-41.1	similarity to C.elegans hypothetical protein, biological_process unknown, molecular_function unknown, cytoplasm
423.	YGL014W	124	-41.1	similarity to Drosophila pumilio protein and Mpt5p protein, PUF4, mRNA catabolism, deadenylylation-dependent, mRNA binding, cytoplasm
424.	YJL148W	166	-41.1	nonessential component of RNA-polI, RPA34, transcription from Pol I promoter, DNA-directed RNA polymerase activity, nucleus
425.	YDR301W	35	-40.5	pre-mRNA 3^-end processing factor CF II, CFT1, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
426.	YNL232W	113	-40.3	core component of the 3^-5^ exosome, CSL4, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
427.	YAR003W	21	-40.3	subunit of the COMPASS complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres, SWD1, chromatin silencing at telomere, transcriptional activator activity, nuclear chromatin
428.	YJR041C	90	-40.2	weak similarity to hypothetical protein SPAC2G11.02 S. pombe, URB2, ribosome biogenesis, molecular_function unknown, nucleolus
429.	YDR404C	99	-40.2	DNA-directed RNA polymerase II, 19 KD subunit, RPB7, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase II, core complex
430.	YJL208C	85	-39.9	nuclease, mitochondrial, NUC1, DNA recombination, endodeoxyribonuclease activity, mitochondrial inner membrane
431.	YOL090W	96	-39.7	DNA mismatch repair protein, MSH2, DNA recombination, ATPase activity, nuclear chromosome
432.	YGR074W	85	-39.6	snRNA-associated protein, SMD1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
433.	YHR143W-A	217	-39.4	DNA-directed RNA polymerases I, II, III 7.7 KD subunit, RPC10, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
434.	YJL115W	86	-39.3	anti-silencing protein, ASF1, DNA damage response, signal transduction resulting in induction of apoptosis, histone binding, chromatin assembly complex
435.	YBR202W	82	-39.2	cell division control protein, CDC47, DNA replication initiation, chromatin binding, cytoplasm
436.	YDL150W	105	-38.9	DNA-directed RNA polymerase III, 47 KD subunit, RPC53, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
437.	YJR093C	103	-38.9	component of pre-mRNA polyadenylation factor PF I, FIP1, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
438.	YDL165W	46	-38.8	transcription factor, CDC36, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
439.	YPR155C	69	-38.8	control of mitochondrial synthesis of Atp6p and Atp8p, NCA2, aerobic respiration, molecular_function unknown, mitochondrion
440.	YNR046W	105	-38.8	strong similarity to S.pombe hypothetical protein SPAC31A2.02, biological_process unknown, molecular_function unknown, cytoplasm
441.	YNL207W	123	-38.7	similarity to M.jannaschii hypothetical protein MJ1073, RIO2, processing of 20S pre-rRNA, protein kinase activity, nucleus
442.	YPL082C	151	-38.5	transcriptional accessory protein, MOT1, regulation of transcription from Pol II promoter, ATPase activity, nuclear chromosome
443.	YDR289C	118	-37.9	regulator of Ty1 Transposition, RTT103, negative regulation of DNA transposition, molecular_function unknown, cellular_component unknown
444.	YDR009W	57	-37.6	galactokinase, GAL3, regulation of transcription, DNA-dependent, protein binding, cytoplasm
445.	YLR332W	37	-37.4	mating process protein, MID2, cell wall organization and biogenesis, transmembrane receptor activity, integral to plasma membrane
446.	YNL262W	150	-37.4	DNA-directed DNA polymerase epsilon, catalytic subunit A, POL2, chromatin silencing at telomere, epsilon DNA polymerase activity, replication fork
447.	YML007W	105	-37.3	transcriptional activator involved in oxidative stress response, YAP1, response to oxidative stress, transcription factor activity, cytoplasm
448.	YNL151C	71	-37.3	DNA-directed RNA polymerase III, 31 KD subunit, RPC31, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
449.	YNR038W	129	-37.3	RNA helicase required for 60S ribosomal subunit assembly, DBP6, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
450.	YGL130W	69	-37.1	mRNA guanylyltransferase (mRNA capping enzyme, alpha subunit), CEG1, mRNA capping, mRNA guanylyltransferase activity, nucleus
451.	YLL011W	60	-36.9	involved in 18S pre-rRNA production, SOF1, rRNA modification, snoRNA binding, small nucleolar ribonucleoprotein complex
452.	YOR210W	81	-36.6	DNA-directed polymerase I, II, III 8.3 subunit, RPB10, transcription from Pol II promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
453.	YLR357W	80	-36.5	member of RSC complex, which remodels the structure of chromatin, RSC2, chromatin remodeling, molecular_function unknown, nucleosome remodeling complex
454.	YAL025C	101	-36.4	nuclear viral propagation protein, MAK16, ribosomal large subunit biogenesis, molecular_function unknown, nucleolus
455.	YGR005C	80	-36.1	TFIIF subunit (transcription initiation factor), 54 kD, TFG2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIF complex
456.	YEL032W	169	-35.9	replication initiation protein, MCM3, DNA replication initiation, chromatin binding, cytoplasm
457.	YCL061C	51	-35.9	similarity to URK1, MRC1, chromatin silencing at telomere, molecular_function unknown, nucleus
458.	YPL228W	158	-35.8	RNA 5^-triphosphatase (mRNA capping enzyme, beta subunit), CET1, mRNA capping, polynucleotide 5'-phosphatase activity, nucleus
459.	YPL178W	55	-35.7	small subunit of the nuclear cap-binding protein complex CBC, CBC2, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, commitment complex
460.	YNL075W	107	-35.5	component of the U3 small nucleolar ribonucleoprotein, IMP4, rRNA modification, rRNA primary transcript binding, small nucleolar ribonucleoprotein complex
461.	YNL021W	58	-35.4	histone deacetylase A, HDA1, regulation of transcription, DNA-dependent, histone deacetylase activity, histone deacetylase complex
462.	YMR285C	108	-35.2	similarity to Ccr4p, NGL2, rRNA processing, endoribonuclease activity, intracellular
463.	YBR142W	175	-35.1	ATP-dependent RNA helicase, MAK5, rRNA processing, ATP-dependent RNA helicase activity, nucleolus
464.	YDR121W	84	-35.1	DNA polymerase II (epsilon) 4th subunit, DPB4, chromatin silencing at telomere, epsilon DNA polymerase activity, chromatin accessibility complex
465.	YOR056C	128	-35	weak similarity to human phosphorylation regulatory protein HP-10, NOB1, ubiquitin-dependent protein catabolism, unfolded protein binding, nucleus
466.	YIR009W	16	-34.7	U2 snRNA-associated protein with similarity to U2B, MSL1, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U2
467.	YML014W	69	-34.5	tRNA-methyltransferase modifies uridine residues at the wobble position , TRM9, response to stress, tRNA methyltransferase activity, cytoplasm
468.	YDL005C	48	-34.5	transcriptional regulation mediator, MED2, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
469.	YGR246C	37	-34.4	TFIIIB subunit, 70 kD, BRF1, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIB complex
470.	YMR039C	140	-34.3	transcriptional coactivator, SUB1, positive regulation of transcription from Pol II promoter, transcription coactivator activity, nucleus
471.	YBR198C	145	-34.3	TFIID and SAGA subunit, TAF5, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, SAGA complex
472.	YBR215W	76	-34.2	cell cycle regulatory protein, HPC2, G1/S-specific transcription in mitotic cell cycle, transcription regulator activity, nucleus
473.	YNL286W	16	-34.1	cold sensitive U2 snRNA Suppressor, CUS2, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U2
474.	YML091C	27	-34.1	ribonuclease P precursor, mitochondrial, RPM2, protein biosynthesis, ribonuclease P activity, mitochondrion
475.	YCR042C	40	-34.1	component of TFIID complex, TAF2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIID complex
476.	YDR045C	60	-34	RNA polymerase III subunit C11, required for RNA cleavage activity and transcription termination, RPC11, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
477.	YDR460W	44	-34	TFIIH subunit (transcription/repair factor), TFB3, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
478.	YHR167W	55	-33.9	subunit of the THO complex, which appears to functionally connect transcription elongation with mitotic recombination, THP2, mRNA-nucleus export, nucleic acid binding, THO complex
479.	YKL113C	98	-33.8	ssDNA endonuclease and 5^-3^exonuclease, RAD27, DNA repair, 5'-flap endonuclease activity, nucleus
480.	YLR131C	29	-33.8	metallothionein expression activator, ACE2, G1-specific transcription in mitotic cell cycle, transcriptional activator activity, nucleus
481.	YDR163W	32	-33.5	involved in mRNA splicing , CWC15, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
482.	YOL149W	77	-33.4	mRNA decapping enzyme, DCP1, mRNA catabolism, mRNA binding, cytoplasmic mRNA processing body
483.	YBR102C	87	-33.4	exocyst protein essential for secretion, EXO84, exocytosis, protein binding, bud neck
484.	YML051W	8	-33.4	negative regulator for expression of galactose-induced genes, GAL80, regulation of transcription, DNA-dependent, transcription corepressor activity, cytoplasm
485.	YHR069C	116	-32.6	3^-5^ exoribonuclease required for 3^ end formation of 5.8S rRNA, RRP4, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
486.	YPR182W	32	-32.6	snRNA-associated protein of the SM family, SMX3, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
487.	YKR024C	49	-32.6	RNA helicase required for 60S ribosomal subunit assembly, DBP7, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
488.	YGR156W	69	-32.4	weak similarity to PIR:A40220 cleavage stimulation factor 64K chain - human, PTI1, mRNA polyadenylylation, pre-mRNA cleavage factor activity, nucleus
489.	YKR095W-A	79	-32.4	conserved hypothetical protein, PCC1, biological_process unknown, molecular_function unknown, cellular_component unknown
490.	YML036W	49	-32.2	weak similarity to C.elegans hypothetical protein CELW03F8, biological_process unknown, molecular_function unknown, cellular_component unknown
491.	YDR240C	14	-32.2	U1 snRNA protein, no counterpart in mammalian snRNP, SNU56, nuclear mRNA splicing, via spliceosome, mRNA binding, snRNP U1
492.	YDR181C	26	-32.1	involved in silencing at telomeres, SAS4, chromatin silencing at telomere, H3/H4 histone acetyltransferase activity, nuclear chromatin
493.	YIL131C	13	-32	forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle, FKH1, pseudohyphal growth, transcription factor activity, nucleus
494.	YDR159W	49	-32	leucine permease transcriptional regulator, SAC3, mRNA-nucleus export, protein binding, nuclear pore
495.	YKR056W	86	-31.8	tRNA(m5U54)methyltransferase, TRM2, tRNA modification, tRNA methyltransferase activity, cellular_component unknown
496.	YGR145W	201	-31.7	similarity to C.elegans hypothetical protein, ENP2, rRNA processing, molecular_function unknown, nucleolus
497.	YHR119W	95	-31.6	involved in chromatin-mediated gene regulation, SET1, chromatin silencing at telomere, histone lysine N-methyltransferase activity (H3-K4 specific), nucleus
498.	YLL004W	28	-31.6	origin recognition complex, 62 kDa subunit, ORC3, DNA replication initiation, DNA replication origin binding, nuclear origin of replication recognition complex
499.	YOR078W	71	-31.6	weak similarity to YMR172w, BUD21, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
500.	YNL186W	63	-31.3	derepression of telomeric silencing, UBP10, protein deubiquitination, ubiquitin-specific protease activity, nucleus
501.	YLR285W	64	-31.3	weak similarity to A.thaliana hypothetical protein, NNT1, chromatin silencing at ribosomal DNA, nicotinamide N-methyltransferase activity, cytoplasm
502.	YGR063C	46	-31.3	transcription elongation protein, SPT4, regulation of transcription, DNA-dependent, Pol II transcription elongation factor activity, nucleus
503.	YJL184W	84	-31	hypothetical protein, GON7, response to dessication, molecular_function unknown, cellular_component unknown
504.	YNR003C	50	-30.9	DNA-directed RNA polymerase III, 34 KD subunit, RPC34, transcription from Pol III promoter, DNA-directed RNA polymerase activity, cytoplasm
505.	YDR512C	20	-30.7	questionable ORF, EMI1, sporulation (sensu Fungi), molecular_function unknown, cellular_component unknown
506.	YDR145W	106	-30.3	TFIID and SAGA subunit, TAF12, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, SAGA complex
507.	YOR017W	19	-30.3	component of mitochondrial translation system, PET127, RNA processing, molecular_function unknown, mitochondrial membrane
508.	YNR052C	62	-30.2	required for glucose derepression, POP2, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
509.	YOR194C	16	-29.9	TFIIA subunit (transcription initiation factor), 32 kD, TOA1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIA complex
510.	YNL001W	65	-29.9	functions in protein translation to promote G1 progression and differentiation, DOM34, protein biosynthesis, molecular_function unknown, cytoplasm
511.	YGR274C	86	-29.9	TFIID subunit (TBP-associated factor), 145 kD, TAF1, protein amino acid phosphorylation, general RNA polymerase II transcription factor activity, transcription factor TFIID complex
512.	YGL013C	59	-29.4	transcription factor, PDR1, regulation of transcription from Pol II promoter, DNA binding, nucleus
513.	YGL094C	58	-29.2	component of Pab1p-stimulated poly(A) ribonuclease, PAN2, mRNA processing, poly(A)-specific ribonuclease activity, cytoplasm
514.	YAL001C	54	-29.1	TFIIIC (transcription initiation factor) subunit, 138 kD, TFC3, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
515.	YGL213C	67	-28.7	antiviral protein of the beta-transducin (WD-40) repeat family, SKI8, protein complex assembly, translation repressor activity, cytoplasm
516.	YKL074C	37	-28.2	pre-mRNA splicing factor, MUD2, U2-type nuclear mRNA branch site recognition, pre-mRNA splicing factor activity, commitment complex
517.	YGL246C	73	-28.1	weak similarity to C.elegans dom-3 protein, RAI1, processing of 27S pre-rRNA, enzyme regulator activity, nucleus
518.	YGL150C	67	-28	similarity to Snf2p and human SNF2alpha, INO80, chromatin remodeling, ATPase activity, chromatin remodeling complex
519.	YPL128C	53	-28	telomere TTAGGG repeat-binding factor 1, TBF1, loss of chromatin silencing, DNA binding, nucleus
520.	YGL171W	196	-27.8	ATP-dependent RNA helicase, ROK1, 35S primary transcript processing, ATPase activity, nucleolus
521.	YOR290C	105	-27.8	component of SWI/SNF global transcription activator complex, SNF2, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
522.	YOR110W	50	-27.8	TFIIIC (transcription initiation factor) subunit, 55 kDa, TFC7, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
523.	YDL006W	13	-27.7	protein serine/threonine phosphatase 2c, PTC1, response to osmotic stress, protein phosphatase type 2C activity, cytoplasm
524.	YKL110C	58	-27.6	involved in resistance to K.lactis killer toxin, KTI12, cell growth and/or maintenance, enzyme regulator activity, DNA-directed RNA polymerase II, holoenzyme
525.	YKL099C	33	-27.6	U3 snoRNP protein , UTP11, processing of 20S pre-rRNA, snoRNA binding, small nucleolar ribonucleoprotein complex
526.	YPR179C	44	-27.6	Subunit of a tetrameric trichostatin A-sensitive class II histone deacetylase complex, HDA3, regulation of transcription, DNA-dependent, histone deacetylase activity, nucleus
527.	YKR099W	37	-27.4	transcription factor, BAS1, transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
528.	YOR001W	131	-27.3	similarity to human nucleolar 100K polymyositis-scleroderma protein, RRP6, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
529.	YKL160W	29	-27.3	similarity to hypothetical S. pombe protein, ELF1, cell growth, molecular_function unknown, nucleus
530.	YDR156W	71	-27.2	DNA-directed RNA polymerase I, A14 subunit, RPA14, transcription from Pol I promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase I complex
531.	YOL051W	82	-27.1	DNA-directed RNA polymerase II holoenzyme and Kornberg^s mediator (SRB) subcomplex subunit, GAL11, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
532.	YLL013C	136	-27	transcript-specific regulator of mRNA degradation, PUF3, mRNA catabolism, deadenylylation-dependent, mRNA binding, cytoplasm
533.	YER127W	67	-27	Ngg1p interacting protein, LCP5, rRNA modification, RNA binding, small nucleolar ribonucleoprotein complex
534.	YBR195C	13	-26.9	chromatin assembly complex, subunit p50, MSI1, DNA repair, molecular_function unknown, chromatin assembly complex
535.	YDR295C	82	-26.8	Subunit of a tetrameric trichostatin A-sensitive class II histone deacetylase complex , HDA2, regulation of transcription, DNA-dependent, histone deacetylase activity, nucleus
536.	YPR034W	101	-26.8	component of SWI-SNF global transcription activator complex and RSC chromatin remodeling complex, ARP7, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleus
537.	YNR032C-A	100	-26.8	weak similarity to ubiquitin-like proteins, HUB1, cellular morphogenesis during conjugation with cellular fusion, protein binding, shmoo tip
538.	YHR056C	43	-26.7	strong similarity to YHR054c, RSC30, regulation of transcription, DNA-dependent, DNA binding, RSC complex
539.	YER139C	39	-26.6	similarity to hypothetical protein YDR066c, biological_process unknown, molecular_function unknown, cytoplasm
540.	YMR172W	18	-26.4	similarity to MSN1 protein, HOT1, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nuclear chromosome
541.	YNL068C	58	-26.3	homology to D.melanogaster forkhead protein, FKH2, pseudohyphal growth, transcription factor activity, nucleus
542.	YDR527W	55	-26.2	weak similarity to Plasmodium yoelii rhoptry protein, RBA50, transcription from Pol II promoter, DNA-directed RNA polymerase activity, cytoplasm
543.	YOR140W	30	-26.1	transcription factor, SFL1, negative regulation of transcription from Pol II promoter, specific transcriptional repressor activity, nuclear chromosome
544.	YER013W	101	-26.1	pre-mRNA splicing factor, PRP22, U2-type spliceosome dissembly, pre-mRNA splicing factor activity, spliceosome complex
545.	YPR086W	99	-26	TFIIB subunit (transcription initiation factor), factor E, SUA7, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, nucleoplasm
546.	YJL081C	48	-26	actin-related protein, ARP4, regulation of transcription from Pol II promoter, chromatin binding, nucleus
547.	YJR140C	39	-25.9	involved in cell cycle regulation of histone transcription, HIR3, G1/S-specific transcription in mitotic cell cycle, transcription corepressor activity, nucleus
548.	YAR014C	60	-25.9	protein involved in bud-site selection, BUD14, cellular morphogenesis during vegetative growth, molecular_function unknown, bud neck
549.	YDR169C	82	-25.7	SIN3 protein-binding protein, STB3, biological_process unknown, molecular_function unknown, cytoplasm
550.	YPL254W	27	-25.6	transcriptional coactivator, HFI1, transcription from Pol II promoter, transcription cofactor activity, SAGA complex
551.	YLR103C	19	-25.6	required for minichromosome maintenance and initiation of chromosomal DNA replication, CDC45, DNA replication initiation, DNA binding, replication fork
552.	YLR022C	132	-25.5	similarity to C.elegans and M.jannaschii hypothetical proteins, 35S primary transcript processing, molecular_function unknown, cytoplasm
553.	YLR115W	52	-25.2	cleavage and polyadenylation specificity factor, part of CF II, CFT2, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
554.	YNL257C	31	-25.1	Snf1p protein kinase interacting protein, SIP3, transcription initiation from Pol II promoter, transcription cofactor activity, nucleus
555.	YMR216C	66	-25	similarity to S.pombe dsk1, human SRPK1 and other protein kinases, SKY1, response to drug, protein kinase activity, cytoplasm
556.	YML046W	27	-25	pre-mRNA splicing factor, PRP39, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
557.	YHR077C	62	-25	nonsense-mediated mRNA decay protein 2, NMD2, mRNA catabolism, protein binding, cytoplasm
558.	YKR025W	43	-24.9	Pol III transcription, RPC37, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
559.	YML109W	28	-24.9	multicopy suppressor of sin4, ZDS2, establishment of cell polarity (sensu Saccharomyces), molecular_function unknown, nucleus
560.	YHL020C	27	-24.9	negative regulator of phospholipid biosynthesis pathway, OPI1, positive regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
561.	YMR005W	34	-24.9	required for protein synthesis, TAF4, transcription from Pol II promoter, RNA polymerase II transcription factor activity, transcription factor TFIID complex
562.	YHR187W	38	-24.9	confers sensitivity to killer toxin, IKI1, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
563.	YLL022C	26	-24.8	Hat1 Interacting Factor 1, HIF1, chromatin silencing at telomere, molecular_function unknown, nucleus
564.	YML121W	27	-24.8	GTP-binding protein, GTR1, phosphate transport, GTPase activity, cytoplasm
565.	YOL010W	94	-24.5	similarity to human RNA 3^-terminal phosphate cyclase, RCL1, rRNA processing, molecular_function unknown, nucleolus
566.	YIR008C	63	-24.3	DNA-directed DNA polymerase alpha 48kDa subunit (DNA primase), PRI1, DNA replication initiation, alpha DNA polymerase activity, alpha DNA polymerase:primase complex
567.	YLR051C	30	-24.3	similarity to human acidic 82 kDa protein, biological_process unknown, molecular_function unknown, nucleus
568.	YIL019W	26	-24.2	weak similarity to S.pombe hypothetical protein SPAC3F10, FAF1, processing of 20S pre-rRNA, molecular_function unknown, cytoplasm
569.	YOR113W	41	-24	asparagine-rich zinc finger protein, AZF1, regulation of transcription, DNA-dependent, DNA binding, nucleus
570.	YKR062W	66	-24	TFIIE subunit (transcription initiation factor), 43 KD, TFA2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIE complex
571.	YNR054C	69	-24	similarity to C.elegans hypothetical protein CEESL47F, ESF2, biological_process unknown, transcription regulator activity, cytoplasm
572.	YGL162W	6	-23.9	hypoxic protein involved in sterol uptake, SUT1, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
573.	YJR091C	68	-23.8	suppresses the high-temperature lethality of tub2-150, JSN1, mRNA catabolism, deadenylylation-dependent, mRNA binding, cellular_component unknown
574.	YHL038C	43	-23.8	apo-cytochrome b pre-mRNA processing protein 2, CBP2, Group I intron splicing, pre-mRNA splicing factor activity, mitochondrion
575.	YLR401C	147	-23.8	member of dihydrouridine synthase family, DUS3, tRNA modification, tRNA dihydrouridine synthase activity, cytoplasm
576.	YMR179W	17	-23.7	required for normal transcription at a number of loci, SPT21, regulation of transcription from Pol II promoter, molecular_function unknown, nucleus
577.	YLR256W	51	-23.7	transcription factor, HAP1, aerobic respiration, specific RNA polymerase II transcription factor activity, nucleus
578.	YER068W	94	-23.7	transcriptional repressor, MOT2, regulation of transcription from Pol II promoter, 3'-5'-exoribonuclease activity, cytoplasm
579.	YDR268W	57	-23.7	tryptophanyl-tRNA synthetase, mitochondrial, MSW1, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, mitochondrion
580.	YDL102W	52	-23.5	DNA-directed DNA polymerase delta, catalytic 125 KD subunit, CDC2, lagging strand elongation, delta DNA polymerase activity, delta DNA polymerase complex
581.	YKR038C	44	-23.5	Putative O-sialo-glycoprotein-endopeptidase A1, KAE1, biological_process unknown, O-sialoglycoprotein endopeptidase activity, cytoplasm
582.	YDR195W	60	-23.3	RNA 3^-end formation protein, REF2, mRNA processing, cleavage and polyadenylylation specificity factor activity, nucleus
583.	YGR276C	65	-23.3	ribonuclease H, RNH70, DNA replication, 3'-5' exonuclease activity, nucleus
584.	YHR205W	124	-23.3	serine/threonine protein kinase involved in stress response and nutrient-sensing signaling pathway, SCH9, protein amino acid phosphorylation, protein serine/threonine kinase activity, cytoplasm
585.	YGR280C	84	-23.2	component of the ribosomal RNA processing machinery, PXR1, 35S primary transcript processing, RNA binding, nucleolus
586.	YHR070W	126	-23.2	strong similarity to N.crassa met-10+ protein, TRM5, tRNA methylation, tRNA (guanine) methyltransferase activity, cytoplasm
587.	YOR174W	39	-22.9	transcription regulation mediator, MED4, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
588.	YKL005C	28	-22.8	Suppressor of ESS1 Prolyl Isomerase interact With RNA Pol II to inhibit Transcription Elongation, BYE1, negative regulation of transcription from Pol II promoter, transcriptional elongation regulator activity, nucleus
589.	YLR059C	47	-22.7	putative 3^-5^ exonuclease, REX2, RNA processing, 3'-5' exonuclease activity, mitochondrion
590.	YDR397C	60	-22.7	functional homolog of human NC2beta/Dr1, NCB2, negative regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
591.	YDR443C	55	-22.5	DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit, SSN2, negative regulation of transcription from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor complex
592.	YDR296W	61	-22.5	Involved in mitochondrial homologous DNA recombination, MHR1, mitochondrial genome maintenance, transcription regulator activity, nucleus
593.	YGR104C	14	-22.4	DNA-directed RNA polymerase II holoenzyme and Kornberg^s mediator (SRB) subcomplex subunit, SRB5, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
594.	YML029W	51	-22.4	hypothetical protein, USA1, nuclear mRNA splicing, via spliceosome, molecular_function unknown, cellular_component unknown
595.	YDR081C	59	-22.3	pyruvate decarboxylase regulatory protein, PDC2, transcription from Pol II promoter, transcription regulator activity, nucleus
596.	YGL107C	79	-22.2	strong similarity to hypothetical protein YBR238c, RMD9, biological_process unknown, molecular_function unknown, mitochondrion
597.	YML080W	55	-22.2	member of dihydrouridine synthase family, DUS1, tRNA modification, tRNA dihydrouridine synthase activity, nucleus
598.	YGR081C	57	-22.1	weak similarity to mammalian myosin heavy chain, SLX9, DNA metabolism, molecular_function unknown, nucleus
599.	YJL168C	82	-22.1	enhancer of zeste-like, SET2, regulation of transcription, DNA-dependent, histone-lysine N-methyltransferase activity, nucleus
600.	YGL073W	54	-22.1	heat shock transcription factor, HSF1, regulation of transcription from Pol II promoter, transcription factor activity, nucleus
601.	YGL091C	21	-22	nucleotide-binding protein, NBP35, biological_process unknown, ATPase activity, nucleus
602.	YDR083W	63	-21.9	protein involved in cleavage at site A2 in pre-rRNA in the pathway of ribosomal RNA processing, RRP8, rRNA processing, methyltransferase activity, nucleolus
603.	YGL050W	27	-21.9	similarity to hypothetical protein SPAC25B8.15c S. pombe, biological_process unknown, molecular_function unknown, cellular_component unknown
604.	YOR281C	123	-21.7	phosducin homologue, likely to be involved in regulation of pheromone response, PLP2, positive regulation of transcription from Pol II promoter by pheromones, GTPase inhibitor activity, cytoplasm
605.	YIL008W	91	-21.7	ubiquitin related modifier, URM1, protein modification, protein binding, cytoplasm
606.	YIR033W	24	-21.6	may be involved in the remodeling chromatin structure, MGA2, positive regulation of transcription from Pol II promoter, transcriptional activator activity, endoplasmic reticulum membrane
607.	YDR217C	46	-21.5	DNA repair checkpoint protein, RAD9, DNA repair, protein binding, nucleus
608.	YKL021C	129	-21.5	involved in cell growth and replication of M1 dsRNA virus, MAK11, ribosomal large subunit biogenesis, molecular_function unknown, membrane fraction
609.	YLR105C	15	-21.5	tRNA splicing endonuclease beta subunit, SEN2, tRNA splicing, tRNA-intron endonuclease activity, mitochondrial outer membrane
610.	YEL015W	80	-21.4	weak similarity to Spa2p, EDC3, deadenylylation-dependent decapping, molecular_function unknown, cytoplasmic mRNA processing body
611.	YNL292W	307	-21.4	pseudouridine synthase, PUS4, tRNA modification, pseudouridylate synthase activity, nucleus
612.	YMR043W	43	-21.4	transcription factor of the MADS box family, MCM1, regulation of transcription from Pol II promoter, DNA binding, nucleus
613.	YNR011C	39	-21.4	RNA-dependent ATPase of DEAH box family, PRP2, U2-type catalytic spliceosome formation for first transesterification step, pre-mRNA splicing factor activity, nucleus
614.	YDR228C	56	-21.4	component of pre-mRNA 3^-end processing factor CF I, PCF11, mRNA polyadenylylation, protein binding, mRNA cleavage factor complex
615.	YDR021W	52	-21.4	involved in maturation of 18S rRNA, FAL1, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
616.	YIL036W	77	-21.3	ATF/CREB activator, CST6, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
617.	YOL148C	29	-21.3	member of the TBP class of SPT proteins that alter transcription site selection, SPT20, histone acetylation, transcription cofactor activity, SAGA complex
618.	YBL103C	34	-21.2	bHLH/zip transcription factor that regulates CIT2 gene expression, RTG3, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, cytoplasm
619.	YDR311W	62	-21.2	TFIIH subunit (transcription initiation factor), 75 kD, TFB1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
620.	YPR025C	48	-21.2	TFIIH subunit (transcription initiation factor), cyclin C component, CCL1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
621.	YNL119W	33	-21	protein with role in invasive growth, NCS2, pseudohyphal growth, molecular_function unknown, cytoplasm
622.	YKR079C	47	-20.9	similarity to S.pombe hypothetical protein SPAC1D4.10, TRZ1, removal of tRNA 3'-trailer sequence, purine nucleotide binding, cytoplasm
623.	YER148W	47	-20.9	the TATA-binding protein TBP, SPT15, transcription initiation from Pol II promoter, DNA binding, nucleus
624.	YIL079C	20	-20.9	arginine methyltransferase-interacting RING finger protein, AIR1, mRNA-nucleus export, molecular_function unknown, nucleus
625.	YOL080C	24	-20.8	strong similarity to X.laevis XPMC2 protein and YGR276c, REX4, rRNA processing, 3'-5' exonuclease activity, nucleus
626.	YPL046C	13	-20.7	Elongin C transcription elongation factor, ELC1, RNA elongation from Pol II promoter, transcriptional elongation regulator activity, transcription elongation factor complex
627.	YNR015W	72	-20.6	Suppressor of Mitochondrial Mutation in the tRNAasp gene; Dihydrouridine synthase 2, SMM1, tRNA processing, tRNA dihydrouridine synthase activity, cytoplasm
628.	YMR312W	29	-20.6	subunit of RNA polymerase II elongator complex, ELP6, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, transcription elongation factor complex
629.	YPL211W	115	-20.6	required for efficient 60S ribosome subunit biogenesis, NIP7, rRNA processing, molecular_function unknown, nucleolus
630.	YGR075C	12	-20.5	pre-mRNA splicing factor, PRP38, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, U4/U6 x U5 tri-snRNP complex
631.	YKR052C	29	-20.4	Protein of the mitochondrial carrier family (MCF) - unknown function, MRS4, transport, iron ion transporter activity, mitochondrion
632.	YDL056W	49	-20.4	transcription factor, subunit of the MBF factor, MBP1, regulation of cell cycle, DNA binding, nucleus
633.	YKL028W	40	-20.4	TFIIE subunit (transcription initiation factor), 66 kD, TFA1, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIE complex
634.	YOR201C	31	-20.3	rRNA (guanosine-2^-O-)-methyltransferase, PET56, rRNA modification, rRNA (guanine-N1-)-methyltransferase activity, mitochondrion
635.	YDR207C	48	-20.3	negative transcriptional regulator, UME6, negative regulation of transcription, mitotic, DNA binding, nucleus
636.	YGL220W	88	-20.2	weak similarity to V.alginolyticus bolA protein, biological_process unknown, molecular_function unknown, cytoplasm
637.	YDR167W	102	-19.9	TFIID and SAGA subunit, TAF10, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, SAGA complex
638.	YKL062W	36	-19.9	transcriptional activator, MSN4, response to stress, DNA binding, cytoplasm
639.	YPL015C	40	-19.8	similarity to Hst1p and Sir2p, HST2, chromatin silencing at telomere, NAD-dependent histone deacetylase activity, cytoplasm
640.	YBR111W-A	21	-19.8	Protein involved in mRNA export couple transcription activation;component of the SAGA histone acetylase complex, SUS1, positive regulation of transcription from Pol II promoter, molecular_function unknown, nuclear pore
641.	YML113W	7	-19.8	datin, oligo(dA)/oligo(dT)-binding protein, DAT1, negative regulation of transcription from Pol II promoter, AT DNA binding, nucleus
642.	YLR176C	17	-19.7	repressor of DNA damage-inducible genes, RFX1, negative regulation of transcription from Pol II promoter, specific transcriptional repressor activity, cytoplasm
643.	YDL044C	33	-19.6	mitochondrial protein involved in mRNA splicing and protein synthesis, MTF2, protein biosynthesis, RNA binding, mitochondrion
644.	YBR065C	28	-19.4	involved in cell wall biogenesis and architecture, ECM2, cell wall organization and biogenesis, molecular_function unknown, nucleus
645.	YER045C	5	-19.4	ATF/CREB activator, ACA1, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
646.	YCR024C	21	-19.4	asn-tRNA synthetase, mitochondrial, protein biosynthesis, asparagine-tRNA ligase activity, mitochondrion
647.	YNR024W	26	-19.2	weak similarity to Rpc31p, biological_process unknown, molecular_function unknown, nucleus
648.	YMR273C	41	-19.2	involved in negative regulation of cell polarity, ZDS1, establishment of cell polarity (sensu Saccharomyces), protein binding, cytoplasm
649.	YDR469W	39	-19.2	weak similarity to D. melanogaster hypothetical protein, SDC1, chromatin silencing at telomere, chromatin binding, nuclear chromatin
650.	YER109C	22	-19.1	required for diploid filamentous growth (pseudogene in S288c), FLO8, pseudohyphal growth, specific RNA polymerase II transcription factor activity, cytoplasm
651.	YKL020C	43	-19	dosage-dependent suppressor of Ty-induced promotor mutations, SPT23, positive regulation of transcription from Pol II promoter, transcriptional activator activity, endoplasmic reticulum membrane
652.	YHR034C	40	-19	weak similarity to TRCDSEMBL:AK000650_1 unnamed ORF; Homo sapiens, PIH1, protein biosynthesis, molecular_function unknown, cytoplasm
653.	YGL133W	52	-18.9	subunit of Isw2 chromatin remodelling complex, ITC1, chromatin remodeling, molecular_function unknown, nucleus
654.	YKR010C	30	-18.9	topoisomerase I interacting factor 2, TOF2, DNA topological change, molecular_function unknown, cell
655.	YGR262C	18	-18.9	weak similarity to protein kinases and M.jannaschii O-sialoglycoprotein endopeptidase homolog, BUD32, protein amino acid phosphorylation, protein serine/threonine kinase activity, cytoplasm
656.	YGL044C	36	-18.9	component of pre-mRNA 3^-end processing factor CF I, RNA15, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage factor complex
657.	YBR083W	10	-18.8	Ty transcription activator, TEC1, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
658.	YBR061C	28	-18.8	2-O-ribose tRNA anticodon loop methyltransferase, TRM7, protein biosynthesis, tRNA methyltransferase activity, cytoplasm
659.	YHR081W	54	-18.7	like rRNA Processing protein involved in regulation of DNA repair and recombination, LRP1, double-strand break repair via nonhomologous end-joining, molecular_function unknown, nuclear exosome (RNase complex)
660.	YOL033W	28	-18.7	glutamyl-tRNA synthetase, mitochondrial, MSE1, protein biosynthesis, glutamate-tRNA ligase activity, mitochondrion
661.	YFL031W	2	-18.7	transcription factor, HAC1, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
662.	YKL116C	21	-18.6	similarity to rat SNF1, Celegans unc-51, Dun1p and other protein serine kinases, PRR1, MAPKKK cascade, receptor signaling protein serine/threonine kinase activity, cytoplasm
663.	YMR227C	23	-18.6	TFIID subunit (TBP-associated factor), 67 kD, TAF7, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, nucleus
664.	YDR412W	37	-18.5	similarity to hypothetical protein SPAC29A4.09 - S. pombe, rRNA processing, molecular_function unknown, cytoplasm
665.	YDL166C	49	-18.5	involved in the oxidative stress response , FAP7, processing of 20S pre-rRNA, molecular_function unknown, nucleus
666.	YOR250C	65	-18.5	cleavage/polyadenylation factor IA subunit, CLP1, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage factor complex
667.	YOR076C	62	-18.4	GTPase with function in 3^-to-5^ degradation of mRNA, SKI7, mRNA catabolism, 3'-5' exonuclease activity, cytoplasm
668.	YFL002C	44	-18.4	ATP-dependent RNA helicase of DEAH box family, SPB4, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
669.	YKL144C	14	-18.4	DNA-direcred RNA polymerase III, 25 KD subunit, RPC25, transcription from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
670.	YER040W	27	-18.1	transcription factor for positive nitrogen regulation, GLN3, positive regulation of transcription from Pol II promoter, transcription factor activity, nucleus
671.	YJL056C	23	-18	metalloregulatory protein involved in zinc-responsive transcriptional regulation, ZAP1, regulation of transcription from Pol II promoter, DNA binding, nucleus
672.	YJL127C	9	-18	transcription regulatory protein, SPT10, chromatin remodeling, histone acetyltransferase activity, nucleus
673.	YNL039W	45	-18	TFIIIB subunit, 90 kD, BDP1, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIB complex
674.	YLR298C	8	-18	associated with the U1 snRNP complex, YHC1, nuclear mRNA splicing, via spliceosome, mRNA binding, snRNP U1
675.	YBR123C	54	-18	TFIIIC (transcription initiation factor) subunit, 95 kD, TFC1, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
676.	YBR188C	10	-17.9	splicing factor, NTC20, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, spliceosome complex
677.	YML114C	14	-17.8	TBP Associated Factor 65 KDa, TAF8, transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
678.	YPR018W	76	-17.6	chromatin assembly complex, subunit p90, RLF2, nucleosome assembly, molecular_function unknown, nucleus
679.	YNL138W-A	5	-17.6	conserved hypothetical protein, RCP10, biological_process unknown, molecular_function unknown, cellular_component unknown
680.	YLR417W	16	-17.5	defective in vacuolar protein sorting, VPS36, protein-vacuolar targeting, regulator of G-protein signaling activity, ESCRT II complex
681.	YNL261W	10	-17.5	origin recognition complex, 50 kDa subunit, ORC5, DNA replication initiation, ATPase activity, nuclear origin of replication recognition complex
682.	YHR006W	12	-17.4	involved in pre-tRNA splicing, STP2, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
683.	YHL027W	13	-17.3	meiotic regulatory protein, RIM101, meiosis, specific transcriptional repressor activity, nucleus
684.	YPR144C	85	-17.2	similarity to YDR060w and C.elegans hypothetical protein, NOC4, processing of 20S pre-rRNA, snoRNA binding, nucleus
685.	YOR359W	20	-17.2	similarity to hypothetical protein Ca49C10.19 Candida albicans, VTS1, protein-vacuolar targeting, RNA binding, cytosol
686.	YFL017W-A	20	-17.2	snRNP G protein (the homologue of the human Sm-G), SMX2, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
687.	YBL052C	24	-17.1	silencing protein, SAS3, chromatin silencing at telomere, histone acetyltransferase activity, nuclear nucleosome
688.	YGR006W	15	-17	U5 snRNA-associated protein, PRP18, nuclear mRNA splicing, via spliceosome, protein binding, spliceosome complex
689.	YPR042C	29	-16.7	similarity to Jsn1p, PUF2, mRNA catabolism, deadenylylation-dependent, mRNA binding, cytoplasm
690.	YOL141W	30	-16.6	similarity to YDR435c and C.elegans hypothetical protein, PPM2, biological_process unknown, C-terminal protein carboxyl methyltransferase activity, cytoplasm
691.	YNL224C	24	-16.6	similarity to hypothetical protein S. pombe, biological_process unknown, molecular_function unknown, cytoplasm
692.	YPR094W	6	-16.6	weak similarity to chicken lim-3 protein, RDS3, response to xenobiotic stimulus, transcription factor activity, spliceosome complex
693.	YLR272C	37	-16.6	subunit of condensin protein complex, YCS4, mitotic chromosome condensation, molecular_function unknown, nuclear condensin complex
694.	YOL054W	24	-16.6	weak similarity to transcription factors, PSH1, RNA elongation from Pol II promoter, molecular_function unknown, nucleus
695.	YDR110W	21	-16.5	DNA replication fork blocking protein, FOB1, DNA recombination, ribosomal DNA (rDNA) binding, nucleolus
696.	YGR158C	42	-16.4	involved in mRNA transport, MTR3, 35S primary transcript processing, 3'-5'-exoribonuclease activity, nuclear exosome (RNase complex)
697.	YNL278W	60	-16.4	similarity to YLR187w, CAF120, regulation of transcription from Pol II promoter, molecular_function unknown, CCR4-NOT complex
698.	YDR005C	25	-16.4	required for sorting of Mod5p, MAF1, negative regulation of transcription from Pol III promoter, molecular_function unknown, nucleus
699.	YJR084W	24	-16.4	signalosome component , CSN12, adaptation to pheromone during conjugation with cellular fusion, molecular_function unknown, signalosome complex
700.	YOL071W	19	-16.3	similarity to hypothetical S. pombe protein, EMI5, sporulation (sensu Fungi), molecular_function unknown, mitochondrion
701.	YBL006C	41	-16.3	hypothetical protein, LDB7, cell wall mannoprotein biosynthesis, molecular_function unknown, cellular_component unknown
702.	YGR271C-A	31	-16.3	conserved hypothetical protein, biological_process unknown, molecular_function unknown, nucleolus
703.	YBR278W	27	-16.2	DNA-directed DNA polymerase epsilon, subunit C, DPB3, chromatin silencing at telomere, epsilon DNA polymerase activity, replication fork
704.	YBR275C	50	-16.1	RAP1-interacting factor 1, RIF1, chromatin silencing at telomere, molecular_function unknown, nuclear telomere cap complex
705.	YNL076W	19	-16	pleiotropic regulatory factor, MKS1, regulation of nitrogen utilization, transcriptional repressor activity, intracellular
706.	YLR015W	37	-16	weak similarity to S.pombe hypothetical protein SPBC13G1, BRE2, chromatin silencing at telomere, chromatin binding, nuclear chromatin
707.	YFL024C	36	-15.9	weak similarity to YMR164c and Gal11p, EPL1, regulation of transcription from Pol II promoter, histone acetyltransferase activity, histone acetyltransferase complex
708.	YER169W	23	-15.9	similarity to human retinoblastoma binding protein 2, RPH1, DNA repair, specific transcriptional repressor activity, nucleus
709.	YNL107W	23	-15.9	similarity to human AF-9 protein, YAF9, chromatin remodeling, molecular_function unknown, cytoplasm
710.	YLR277C	78	-15.8	component of pre-mRNA polyadenylation factor PF I, YSH1, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
711.	YBR022W	17	-15.5	weak similarity to hypothetical protein Mycobacterium tuberculosis, POA1, biological_process unknown, hydrolase activity, cellular_component unknown
712.	YGR072W	39	-15.4	nonsense-mediated mRNA decay protein, UPF3, mRNA catabolism, molecular_function unknown, cytoplasm
713.	YDL087C	4	-15.4	yeast U1 snRNP protein with a role in 5^ splice site recognition, LUC7, mRNA splice site selection, mRNA binding, snRNP U1
714.	YOR287C	32	-15.4	weak similarity to PITSLRE protein kinase isoforms, processing of 20S pre-rRNA, molecular_function unknown, cellular_component unknown
715.	YNL072W	22	-15.4	35 kDa catalytic subunit of Ribonuclease RNH2, RNH201, DNA replication, ribonuclease H activity, nucleus
716.	YPL089C	23	-15.4	transcription factor of the MADS box family, RLM1, cell wall organization and biogenesis, DNA binding, nucleus
717.	YNL136W	17	-15.4	similarity to neurofilament triplet M protein, EAF7, biological_process unknown, molecular_function unknown, nucleus
718.	YPR008W	36	-15.3	similarity to transcription factor, HAA1, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
719.	YLR116W	24	-15.3	branch point bridging protein, MSL5, nuclear mRNA splicing, via spliceosome, RNA binding, commitment complex
720.	YLR382C	26	-15.3	leucine--tRNA ligase precursor, mitochondrial, NAM2, Group I intron splicing, mRNA binding, mitochondrion
721.	YJL006C	11	-15.1	carboxy-terminal domain (CTD) kinase, beta subunit, CTK2, protein amino acid phosphorylation, cyclin-dependent protein kinase regulator activity, nucleus
722.	YGR129W	23	-15	synthetic lethal with CDC40, SYF2, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, spliceosome complex
723.	YGR251W	26	-15	hypothetical protein, processing of 20S pre-rRNA, molecular_function unknown, nucleus
724.	YCR065W	14	-14.9	transcription factor, HCM1, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
725.	YNR010W	17	-14.9	subunit of RNA polymerase II mediator complex, CSE2, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
726.	YER022W	81	-14.7	DNA-directed RNA polymerase II holoenzyme and Kornberg^s mediator (SRB) subcomplex subunit, SRB4, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
727.	YJL011C	28	-14.7	DNA-directed RNA polymerase III, 17, 7 KD subunit, RPC17, transcription initiation from Pol III promoter, DNA-directed RNA polymerase activity, DNA-directed RNA polymerase III complex
728.	YGL211W	38	-14.7	protein with role in invasive growth, NCS6, biological_process unknown, molecular_function unknown, mitochondrion
729.	YPR168W	10	-14.6	negative transcription regulator from artifical reporters, NUT2, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
730.	YMR023C	13	-14.6	mitochondrial GTPase involved in expression of COX1, MSS1, protein biosynthesis, GTP binding, mitochondrial inner membrane
731.	YKL059C	43	-14.5	role in mRNA 3^ end formation , MPE1, mRNA polyadenylylation, molecular_function unknown, mRNA cleavage and polyadenylation specificity factor complex
732.	YOR166C	15	-14.5	similarity to PIR:T50422 hypothetical protein S. pombe, biological_process unknown, molecular_function unknown, cellular_component unknown
733.	YPL007C	17	-14.5	RNA Polymerase III transcription initiation factor TFIIIC (tau), 60 kDa subunit, TFC8, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
734.	YLR052W	39	-14.4	INO80 chromatin remodeling complex subunit 3, IES3, chromatin remodeling, molecular_function unknown, nucleus
735.	YPL029W	14	-14.4	ATP-dependent RNA helicase, mitochondrial, SUV3, RNA catabolism, ATP-dependent RNA helicase activity, mitochondrion
736.	YML102W	26	-14.4	chromatin assembly complex, subunit p60, CAC2, DNA repair, molecular_function unknown, chromatin assembly complex
737.	YOR004W	61	-14.3	weak similarity to hypothetical protein YDR339c, rRNA processing, molecular_function unknown, mitochondrion
738.	YOR159C	5	-14.3	spliceosomal snRNA-associated Sm core protein required for mRNA splicing, also likely associated with telomerase TLC1 RNA, SME1, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, small nuclear ribonucleoprotein complex
739.	YPL005W	19	-14.2	weak similarity to Nup2p, AEP3, mRNA metabolism, molecular_function unknown, cytoplasm
740.	YPR081C	20	-14.2	strong similarity to glycyl-tRNA synthetases, GRS2, glycyl-tRNA aminoacylation, glycine-tRNA ligase activity, cytoplasm
741.	YNL062C	44	-14.2	translation initiation factor eIF3 RNA-binding subunit, GCD10, translational initiation, tRNA methyltransferase activity, nucleus
742.	YGL035C	36	-14.1	transcriptional repressor, MIG1, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, cytoplasm
743.	YCR047C	43	-14.1	weak similarity to N-methyltransferases, BUD23, bud site selection, S-adenosylmethionine-dependent methyltransferase activity, cytoplasm
744.	YPL011C	23	-14.1	component of the TBP-associated protein complex, TAF3, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIID complex
745.	YKR086W	25	-14.1	RNA-dependent ATPase, PRP16, formation of catalytic U2-type spliceosome for second transesterification step, pre-mRNA splicing factor activity, spliceosome complex
746.	YDR363W	17	-14	involved in silencing, ESC2, chromatin silencing at silent mating-type cassette (sensu Fungi), molecular_function unknown, nucleus
747.	YCL031C	42	-14	involved in pre-rRNA processing and ribosome assembly, RRP7, 35S primary transcript processing, molecular_function unknown, nucleus
748.	YNL222W	21	-13.9	suppressor of cs mutant of sua7, SSU72, 35S primary transcript processing, protein tyrosine phosphatase activity, nucleus
749.	YER028C	12	-13.9	similarity to Mig1p, MIG3, negative regulation of transcription from Pol II promoter, DNA binding, nucleus
750.	YDR206W	20	-13.8	similarity to EST1 protein, EBS1, telomerase-dependent telomere maintenance, molecular_function unknown, nucleus
751.	YDL115C	14	-13.8	Interacts With RNA Polymerase II, IWR1, meiosis, molecular_function unknown, cytoplasm
752.	YMR112C	18	-13.7	mediator complex subunit, MED11, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
753.	YPL101W	20	-13.7	RNA polymerase II Elongator protein subunit, ELP4, regulation of transcription from Pol II promoter, Pol II transcription elongation factor activity, cytoplasm
754.	YOR244W	24	-13.5	histone acetyltransferase, ESA1, regulation of transcription from Pol II promoter, histone acetyltransferase activity, histone acetyltransferase complex
755.	YDR235W	12	-13.5	U1 snRNP associated protein, required for pre-mRNA splicing, PRP42, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
756.	YOR119C	47	-13.5	similarity to a C.elegans ZK632.3 protein, RIO1, processing of 20S pre-rRNA, protein kinase activity, cytoplasm
757.	YIR023W	48	-13.5	transcriptional activator for allantoin and GABA catabolic genes, DAL81, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
758.	YGL025C	20	-13.4	mediator complex subunit, PGD1, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
759.	YGL222C	13	-13.3	stimulates mRNA decapping, EDC1, deadenylylation-dependent decapping, mRNA binding, cytoplasm
760.	YNL199C	13	-13.3	glycolytic genes transcriptional activator, GCR2, positive regulation of transcription from Pol II promoter, transcriptional activator activity, nucleus
761.	YFL001W	31	-13.3	pseudouridine synthase, DEG1, RNA processing, pseudouridylate synthase activity, cytoplasm
762.	YOL093W	76	-13.2	similarity to C.elegans hypothetical protein F25H8.1, TRM10, tRNA methylation, tRNA (guanine) methyltransferase activity, cytoplasm
763.	YMR240C	26	-13.1	U2 snRNP protein, CUS1, spliceosome assembly, protein binding, snRNP U2
764.	YMR236W	23	-13.1	TFIID and SAGA subunit, TAF9, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, SAGA complex
765.	YML005W	16	-13	similarity to hypothetical S.pombe protein, TRM12, biological_process unknown, S-adenosylmethionine-dependent methyltransferase activity, cytoplasm
766.	YHR091C	200	-13	arginyl-tRNA synthetase, mitochondrial, MSR1, protein biosynthesis, arginine-tRNA ligase activity, mitochondrion
767.	YBR236C	39	-13	mRNA cap methyltransferase, ABD1, mRNA capping, mRNA (guanine-N7-)-methyltransferase activity, nucleus
768.	YBR119W	16	-12.9	U1 snRNP-specific A protein, MUD1, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
769.	YGR013W	23	-12.9	associated with U1 snRNP, no counterpart in mammalian U1 snRNP, SNU71, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
770.	YHR169W	41	-12.8	strong similarity to Drs1p and other probable ATP-dependent RNA helicases, DBP8, 35S primary transcript processing, ATP-dependent RNA helicase activity, nucleolus
771.	YMR037C	31	-12.8	stress responsive regulatory protein, MSN2, response to stress, DNA binding, nucleus
772.	YPL135W	59	-12.7	strong similarity to nitrogen fixation protein (nifU), ISU1, iron ion homeostasis, protein binding, mitochondrion
773.	YOR226C	18	-12.7	strong similarity to nitrogen fixation proteins, ISU2, iron ion homeostasis, molecular_function unknown, mitochondrial matrix
774.	YDR464W	57	-12.6	negative regulator of PRP3 and PRP4 gene expression, SPP41, negative regulation of transcription from Pol II promoter, molecular_function unknown, nucleus
775.	YPR162C	33	-12.6	origin recognition complex, 56 KD subunit, ORC4, DNA replication initiation, DNA replication origin binding, nuclear origin of replication recognition complex
776.	YER032W	13	-12.5	interacts with the poly(A) polymerase in the two hybrid system, FIR1, mRNA polyadenylylation, molecular_function unknown, bud neck
777.	YOL135C	36	-12.4	member of RNA Polymerase II transcriptional regulation mediator complex, MED7, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
778.	YOL067C	50	-12.1	basic helix-loop-helix transcription factor that regulates CIT2 gene expression, RTG1, transcription initiation from Pol II promoter, transcription coactivator activity, cytoplasm
779.	YBL054W	40	-12	weak similarity to transforming protein (B-myb), biological_process unknown, molecular_function unknown, cytoplasm
780.	YKL139W	13	-11.9	carboxy-terminal domain (CTD) kinase, alpha subunit, CTK1, protein amino acid phosphorylation, protein kinase activity, nucleus
781.	YDR146C	15	-11.9	transcription factor, SWI5, G1-specific transcription in mitotic cell cycle, transcriptional activator activity, cytoplasm
782.	YPL104W	29	-11.9	aspartate--tRNA ligase, mitochondrial, MSD1, protein biosynthesis, aspartate-tRNA ligase activity, mitochondrion
783.	YGR222W	18	-11.7	splicing protein and translational activator, mitochondrial, PET54, protein biosynthesis, RNA binding, mitochondrial inner membrane
784.	YGR122W	16	-11.7	hypothetical protein, biological_process unknown, molecular_function unknown, cytoplasm
785.	YDR392W	37	-11.6	general transcriptional adaptor or co-activator, SPT3, sporulation (sensu Fungi), transcription cofactor activity, SAGA complex
786.	YNL027W	22	-11.6	calcineurin responsive zinc-finger, CRZ1, regulation of transcription, DNA-dependent, transcription factor activity, cytoplasm
787.	YIL143C	51	-11.5	DNA helicase, SSL2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
788.	YOL089C	15	-11.5	transcriptional activator of ENA1, HAL9, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
789.	YJR043C	7	-11.5	polymerase-associated gene, third (55 kDa) subunit of DNA polymerase delta, POL32, lagging strand elongation, delta DNA polymerase activity, nucleus
790.	YER159C	56	-11.4	functional homolog of human NC2alpha, BUR6, negative regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
791.	YCR081W	37	-11.3	DNA-directed RNA polymerase II holoenzyme and Srb10 CDK subcomplex subunit, SRB8, negative regulation of transcription from Pol II promoter, RNA polymerase II transcription mediator activity, transcription factor complex
792.	YNL317W	11	-11.3	polyadenylation factor I subunit 2 required for mRNA 3^-end processing, bridges two mRNA 3^-end processing factors, PFS2, mRNA polyadenylylation, cleavage and polyadenylylation specificity factor activity, mRNA cleavage and polyadenylation specificity factor complex
793.	YMR224C	19	-11.2	DNA repair and meiotic recombination protein, MRE11, DNA repair, protein binding, nucleus
794.	YKR019C	20	-11.2	Increased rDNA silencing, IRS4, chromatin silencing at ribosomal DNA, molecular_function unknown, mitochondrion
795.	YJL125C	22	-11.2	translational repressor of GCN4, GCD14, tRNA methylation, tRNA methyltransferase activity, nucleus
796.	YHR058C	44	-11.1	RNA polymerase II transcriptional regulation mediator, MED6, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
797.	YFL021W	18	-11.1	transcription factor for nitrogen regulation, GAT1, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
798.	YPL122C	39	-11.1	TFIIH subunit (transcription/repair factor), TFB2, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
799.	YMR087W	22	-11.1	hypothetical protein, biological_process unknown, molecular_function unknown, cellular_component unknown
800.	YBR152W	14	-11.1	Suppressor of Pre-mRNA Processing mutant, SPP381, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
801.	YHR086W	18	-11	meiotic recombination protein, NAM8, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
802.	YJR006W	23	-11	DNA-directed DNA polymerase delta, 55 KD subunit, HYS2, lagging strand elongation, delta DNA polymerase activity, delta DNA polymerase complex
803.	YLR098C	12	-11	transcription factor, CHA4, regulation of transcription, DNA-dependent, transcription factor activity, nucleus
804.	YPL083C	10	-10.9	tRNA splicing endonuclease alpha subunit, SEN54, tRNA splicing, tRNA-intron endonuclease activity, mitochondrial outer membrane
805.	YCL055W	8	-10.9	regulatory protein required for pheromone induction of karyogamy genes, KAR4, meiosis, transcription regulator activity, nucleus
806.	YHR118C	10	-10.8	origin recognition complex, 50 KD subunit, ORC6, DNA replication initiation, DNA replication origin binding, nuclear origin of replication recognition complex
807.	YOR334W	14	-10.7	Inner mitochondrial membrane, probable magnesium transporter - similar to the bacterial CorA Mg2+ transporter, MRS2, mitochondrial magnesium ion transport, magnesium ion transporter activity, mitochondrial inner membrane
808.	YLR405W	19	-10.7	member of dihydrouridine synthase family, DUS4, tRNA modification, tRNA dihydrouridine synthase activity, cellular_component unknown
809.	YKR077W	8	-10.6	hypothetical protein, biological_process unknown, molecular_function unknown, cytoplasm
810.	YHR085W	28	-10.5	weak similarity to fruit fly brahma transcriptional activator, IPI1, rRNA processing, molecular_function unknown, nucleus
811.	YJL194W	22	-10.5	cell division control protein, CDC6, pre-replicative complex formation and maintenance, protein binding, pre-replicative complex
812.	YMR234W	5	-10.4	ribonuclease H, RNH1, cell wall organization and biogenesis, ribonuclease H activity, cell
813.	YPR134W	16	-10.2	splicing protein, MSS18, Group I intron splicing, molecular_function unknown, mitochondrion
814.	YDR364C	12	-10.2	cell division control protein, CDC40, nuclear mRNA splicing, via spliceosome, pre-mRNA splicing factor activity, nuclear pore
815.	YBL008W	53	-10.1	histone transcription regulator, HIR1, regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
816.	YKL012W	29	-10.1	splicing factor, PRP40, nuclear mRNA splicing, via spliceosome, RNA binding, snRNP U1
817.	YAL020C	15	-10	alpha-tubulin suppressor, ATS1, bud growth, molecular_function unknown, cytoplasm
818.	YDL175C	21	-9.9	affect mRNA transport by regulating arginine methylation of ribonucleoproteins, AIR2, mRNA-nucleus export, molecular_function unknown, nucleus
819.	YNL167C	41	-9.8	cre-binding bzip protein, SKO1, negative regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
820.	YOL124C	18	-9.7	weak similarity to M.jannaschii hypothetical protein, biological_process unknown, S-adenosylmethionine-dependent methyltransferase activity, cytoplasm
821.	YDR440W	20	-9.7	putative ATPase, DOT1, chromatin silencing at telomere, protein-lysine N-methyltransferase activity, nucleus
822.	YNL245C	17	-9.7	similarity to hypothetical protein CG2843 D. melanogaster, CWC25, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
823.	YML015C	24	-9.6	TFIID subunit (TBP-associated factor), 40KD, TAF11, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIID complex
824.	YDR173C	32	-9.6	arginine metabolism transcription factor, ARG82, arginine metabolism, inositol or phosphatidylinositol kinase activity, nucleus
825.	YOL102C	33	-9.5	tRNA 2^-phosphotransferase, TPT1, tRNA splicing, tRNA 2'-phosphotransferase activity, nucleus
826.	YKR101W	18	-9.5	silencing regulatory protein, SIR1, chromatin silencing at silent mating-type cassette (sensu Fungi), DNA binding, chromatin silencing complex
827.	YPR057W	13	-9.5	involved in snRNP biogenesis, BRR1, spliceosome assembly, RNA binding, small nuclear ribonucleoprotein complex
828.	YHR178W	26	-9.5	transcription factor, SIN3 binding, STB5, response to xenobiotic stimulus, transcription factor activity, nucleus
829.	YHR062C	42	-9.5	required for processing of tRNA and 35S rRNA, RPP1, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
830.	YKL125W	40	-9.5	RNA polymerase I specific transcription factor, RRN3, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I transcription factor complex
831.	YMR287C	49	-9.4	3^-5^ exonuclease for RNA 3^ ss-tail, mitochondrial, MSU1, RNA catabolism, exoribonuclease II activity, mitochondrion
832.	YPL248C	8	-9.3	transcription factor, GAL4, regulation of transcription, DNA-dependent, transcriptional activator activity, nucleus
833.	YKL194C	26	-9.2	threonine--tRNA ligase, mitochondrial, MST1, threonyl-tRNA aminoacylation, threonine-tRNA ligase activity, mitochondrion
834.	YGL236C	17	-9.2	strong similarity to gidA E.coli protein, MTO1, protein biosynthesis, molecular_function unknown, mitochondrion
835.	YJL025W	7	-9.2	polymerase I specific transcription initiation factor, RRN7, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I transcription factor complex
836.	YKR022C	6	-9.1	hypothetical protein, nuclear mRNA splicing, via spliceosome, molecular_function unknown, cytoplasm
837.	YKL045W	26	-9.1	DNA-directed DNA polymerase alpha , 58 KD subunit (DNA primase), PRI2, DNA replication initiation, alpha DNA polymerase activity, alpha DNA polymerase:primase complex
838.	YPL138C	27	-8.9	weak similarity to fruit fly polycomblike nuclear protein, SPP1, chromatin silencing at telomere, transcriptional activator activity, nuclear chromatin
839.	YOL066C	22	-8.9	DRAP deaminase, RIB2, vitamin B2 biosynthesis, pseudouridylate synthase activity, cytoplasm
840.	YOR025W	24	-8.8	silencing protein, HST3, chromatin silencing at telomere, DNA binding, nucleus
841.	YLL035W	12	-8.6	similarity to S. pombe SPCC830.03 protein of unknown function, GRC3, rRNA processing, molecular_function unknown, cellular_component unknown
842.	YBR193C	13	-8.5	transcriptional regulation mediator, MED8, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
843.	YOR038C	55	-8.5	histone transcription regulator, HIR2, regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
844.	YDR439W	11	-8.4	involved in rDNA silencing, LRS4, chromatin silencing at ribosomal DNA, molecular_function unknown, nucleus
845.	YGL166W	22	-8.4	copper-dependent transcription factor, CUP2, transcription initiation from Pol II promoter, ligand-regulated transcription factor activity, nucleus
846.	YGR134W	18	-8.4	hypothetical protein, CAF130, regulation of transcription from Pol II promoter, molecular_function unknown, CCR4-NOT complex
847.	YNL282W	11	-8.3	involved in processsing of tRNAs and rRNAs, POP3, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
848.	YCR020W-B	48	-8.2	conserved hypothetical protein, HTL1, regulation of cell cycle, molecular_function unknown, RSC complex
849.	YOR279C	5	-8.2	hypothetical protein, RFM1, chromatin silencing, unfolded protein binding, nucleus
850.	YPL042C	13	-8.1	cyclin-dependent CTD kinase, SSN3, protein amino acid phosphorylation, general RNA polymerase II transcription factor activity, transcription factor complex
851.	YMR021C	13	-8.1	metal binding activator, MAC1, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
852.	YHR040W	69	-8.1	protein required for box C/D snoRNA accumulation, BCD1, snoRNA metabolism, nucleic acid binding, cytoplasm
853.	YNL073W	8	-8	lysyl-tRNA synthetase, mitochondrial, MSK1, lysyl-tRNA aminoacylation, lysine-tRNA ligase activity, mitochondrion
854.	YMR228W	14	-8	RNA polymerase specific factor, mitochondrial, MTF1, transcription from mitochondrial promoter, transcription cofactor activity, mitochondrial matrix
855.	YOL072W	39	-7.9	weak similarity to hypothetical protein C. elegans, THP1, bud site selection, protein binding, nuclear pore
856.	YGL063W	22	-7.9	pseudouridine synthase 2, PUS2, tRNA modification, pseudouridylate synthase activity, cellular_component unknown
857.	YOR162C	33	-7.9	transcription factor, YRR1, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
858.	YLR424W	11	-7.8	weak similarity to Stu1p, SPP382, nuclear mRNA splicing, via spliceosome, RNA binding, cytoplasm
859.	YAL056W	21	-7.7	G protein subunit mimic and signaling effector, GPB2, signal transduction, signal transducer activity, cytoplasm
860.	YPR030W	30	-7.7	similarity to YBL101c, CSR2, cell wall organization and biogenesis, molecular_function unknown, nucleus
861.	YAR008W	17	-7.6	tRNA splicing endonuclease gamma subunit, SEN34, tRNA splicing, tRNA-intron endonuclease activity, mitochondrial outer membrane
862.	YCL067C	16	-7.6	mating type regulatory protein, silenced copy at HML, HMLALPHA2, regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
863.	YDR191W	5	-7.6	member of the Sir2p family of putative NAD-dependent histone deacetylases, HST4, chromatin silencing at telomere, DNA binding, cytoplasm
864.	YKL015W	33	-7.6	positive activator of the proline utilisation pathway, PUT3, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
865.	YCR039C	16	-7.6	mating type regulatory protein, expressed copy at MAT locus, MATALPHA2, regulation of transcription from Pol II promoter, transcription corepressor activity, nucleus
866.	YPR047W	36	-7.5	phenylalanine--tRNA ligase alpha chain, mitochondrial, MSF1, protein biosynthesis, phenylalanine-tRNA ligase activity, mitochondrion
867.	YDR339C	18	-7.5	weak similarity to hypothetical protein YOR004w, biological_process unknown, molecular_function unknown, cellular_component unknown
868.	YOR066W	30	-7.5	hypothetical protein, biological_process unknown, molecular_function unknown, cellular_component unknown
869.	YAL033W	26	-7.4	required for processing of tRNAs and rRNAs, POP5, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
870.	YPL230W	9	-7.4	similarity to Rgm1p, weak similarity to transcription factors, biological_process unknown, molecular_function unknown, cellular_component unknown
871.	YMR283C	16	-7.3	initiator tRNA phosphoribosyl-transferase, RIT1, charged-tRNA modification, transferase activity, transferring pentosyl groups, cytoplasm
872.	YBR289W	25	-7.2	component of SWI/SNF transcription activator complex, SNF5, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
873.	YLR068W	7	-7.1	hypothetical protein, FYV7, processing of 20S pre-rRNA, molecular_function unknown, nucleus
874.	YHL025W	10	-7.1	global transcription activator, SNF6, chromatin remodeling, general RNA polymerase II transcription factor activity, nucleosome remodeling complex
875.	YGR056W	24	-7.1	member of RSC complex, which remodels the structure of chromatin, RSC1, chromatin remodeling, molecular_function unknown, nucleosome remodeling complex
876.	YDR463W	7	-7	pre-tRNA splicing protein, transcription factor, STP1, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
877.	YMR239C	166	-7	double-stranded ribonuclease, RNT1, 35S primary transcript processing, ribonuclease III activity, nucleolus
878.	YNL221C	46	-7	protein component of ribonuclease P and ribonuclease MRP, POP1, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
879.	YBR297W	6	-7	maltose fermentation regulatory protein, MAL33, regulation of transcription, DNA-dependent, transcription factor activity, nucleus
880.	YGL178W	24	-6.9	multicopy suppressor of POP2, MPT5, cell wall organization and biogenesis, mRNA binding, cytoplasm
881.	YPL075W	24	-6.9	transcriptional activator, GCR1, positive regulation of transcription from Pol II promoter, DNA binding, nucleus
882.	YIL003W	12	-6.9	cytoplasmic Fe-S cluster assembly factor, CFD1, iron-sulfur cluster assembly, ATPase activity, cytoplasm
883.	YPL040C	36	-6.9	isoleucine--tRNA ligase, mitochondrial, ISM1, protein biosynthesis, isoleucine-tRNA ligase activity, mitochondrion
884.	YJR102C	4	-6.9	weak similarity to hypothetical protein D. melanogaster, VPS25, protein-vacuolar targeting, molecular_function unknown, ESCRT II complex
885.	YLR451W	10	-6.8	transcription factor, LEU3, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
886.	YDL214C	4	-6.7	strong similarity to putative protein kinase NPR1, PRR2, MAPKKK cascade, receptor signaling protein serine/threonine kinase activity, cellular_component unknown
887.	YPL097W	15	-6.7	tyrosyl-tRNA synthetase, MSY1, tyrosyl-tRNA aminoacylation, tyrosine-tRNA ligase activity, mitochondrion
888.	YPL157W	21	-6.7	weak similarity to S.pombe hypothetical protein SPAC2G11.15c, TGS1, snRNA capping, RNA methyltransferase activity, nucleolus
889.	YDR079C-A	7	-6.6	conserved hypothetical protein, TFB5, DNA repair, molecular_function unknown, nucleus
890.	YBL074C	6	-6.6	A1 cistron splicing factor, AAR2, assembly of spliceosomal tri-snRNP, molecular_function unknown, snRNP U5
891.	YOL063C	26	-6.5	hypothetical protein, HUS1, biological_process unknown, molecular_function unknown, cellular_component unknown
892.	YOR372C	8	-6.5	protein required for nuclear division, NDD1, G2/M-specific transcription in mitotic cell cycle, transcriptional activator activity, nucleus
893.	YOL068C	13	-6.5	silencing protein, HST1, chromatin silencing, NAD-dependent histone deacetylase activity, nucleus
894.	YPR045C	8	-6.5	similarity to C.elegans hypothetical protein, biological_process unknown, molecular_function unknown, nucleus
895.	YJL065C	5	-6.4	Dpb3-Like Subunit of ISW2/yCHRAC complex, DLS1, chromatin silencing at telomere, molecular_function unknown, nucleus
896.	YOL125W	8	-6.4	similarity to hypothetical protein D. melanogaster, biological_process unknown, molecular_function unknown, cytoplasm
897.	YDR423C	10	-6.4	transcriptional activator, CAD1, positive regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
898.	YPL202C	5	-6.3	similarity to cell size regulation protein Rcs1p, AFT2, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
899.	YBL018C	6	-6.3	required for processing of tRNAs and rRNAs, POP8, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
900.	YOR148C	6	-6.3	involved in pre-mRNA processing, SPP2, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
901.	YPL177C	1	-6.2	involved in copper homeostasis repression of protein import, CUP9, transcription initiation from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
902.	YBL014C	26	-6.2	RNA polymerase I specific transcription initiation factor, RRN6, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I transcription factor complex
903.	YPR065W	7	-6	heme-dependent transcriptional repressor of hypoxic genes, ROX1, negative regulation of transcription from Pol II promoter, specific transcriptional repressor activity, nuclear chromosome
904.	YLR021W	11	-6	hypothetical protein, biological_process unknown, molecular_function unknown, cellular_component unknown
905.	YGL209W	4	-6	C2H2 zinc-finger protein, MIG2, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
906.	YGR169C	6	-6	tRNA:Psi 31-synthase , PUS6, tRNA modification, pseudouridylate synthase activity, cytoplasm
907.	YBL071W-A	2	-6	similarity to K. marxianus, KTI11, G1 phase of mitotic cell cycle, molecular_function unknown, cytoplasm
908.	YOR274W	8	-5.8	tRNA isopentenyltransferase, MOD5, tRNA modification, tRNA isopentenyltransferase activity, nucleus
909.	YMR280C	22	-5.8	transcription factor involved in gluconeogenesis, CAT8, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
910.	YLR223C	18	-5.8	pre-rRNA processing machinery control protein, IFH1, rRNA processing, molecular_function unknown, nucleus
911.	YGR024C	11	-5.7	protein required for tRNAHis guanylylation at 5 prime, THG1, tRNA modification, tRNA guanylyltransferase activity, cytoplasm
912.	YDL036C	11	-5.7	strong similarity to RIB2 protein, biological_process unknown, molecular_function unknown, cytoplasm
913.	YFL036W	37	-5.7	DNA-directed RNA polymerase, mitochondrial, RPO41, mitochondrial genome maintenance, DNA-directed RNA polymerase activity, mitochondrial matrix
914.	YGR278W	25	-5.6	involved in mRNA splicing , CWC22, nuclear mRNA splicing, via spliceosome, molecular_function unknown, spliceosome complex
915.	YGR171C	6	-5.6	methionyl-tRNA synthetase, MSM1, methionyl-tRNA aminoacylation, methionine-tRNA ligase activity, mitochondrion
916.	YLR323C	7	-5.6	weak similarity to N.crassa uvs2 protein, CWC24, biological_process unknown, molecular_function unknown, spliceosome complex
917.	YMR268C	11	-5.5	pre-mRNA splicing factor, PRP24, spliceosome assembly, pre-mRNA splicing factor activity, spliceosome complex
918.	YDR308C	4	-5.4	DNA-directed RNA polymerase II holoenzyme and kornberg^s mediator (SRB) subcomplex subunit, SRB7, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
919.	YBR253W	8	-5.3	DNA-directed RNA polymerase II suppressor protein, SRB6, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, mediator complex
920.	YPR068C	9	-5.3	similarity to human histone deacetylase HD1, HOS1, regulation of transcription, DNA-dependent, histone deacetylase activity, histone deacetylase complex
921.	YLR067C	29	-5.3	required for stability and translation of COX1 mRNA, PET309, protein biosynthesis, translation regulator activity, mitochondrial inner membrane
922.	YDR043C	8	-5.2	transcriptional repressor for glucose repression of STA1 gene expression, NRG1, regulation of transcription from Pol II promoter, DNA binding, nucleus
923.	YPR056W	18	-5.1	component of RNA polymerase transcription initiation TFIIH factor, TFB4, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, transcription factor TFIIH complex
924.	YGL194C	7	-5.1	putative histone deacetylase, HOS2, regulation of transcription, DNA-dependent, NAD-dependent histone deacetylase activity, histone deacetylase complex
925.	YML112W	10	-5.1	carboxy-terminal domain (CTD) kinase, gamma subunit, CTK3, protein amino acid phosphorylation, cyclin-dependent protein kinase activity, nucleus
926.	YGR030C	4	-5	required for processing of tRNAs and rRNAs, POP6, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
927.	YHL009C	8	-5	transcription factor, of a fungal-specific family of bzip proteins, YAP3, regulation of transcription from Pol II promoter, transcription factor activity, nucleus
928.	YDR123C	6	-4.9	basic helix-loop-helix (BHLH) transcription factor, INO2, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
929.	YLR363C	6	-4.9	Nam7p interacting protein, NMD4, mRNA catabolism, nonsense-mediated, molecular_function unknown, cytoplasm
930.	YDR183W	2	-4.8	Phosducin homologue likely to be involved in regulation of pheromone response, PLP1, positive regulation of transcription from Pol II promoter by pheromones, GTPase inhibitor activity, cytoplasm
931.	YPL026C	4	-4.7	suppressor kinase of snf3, SKS1, protein amino acid phosphorylation, protein serine/threonine kinase activity, cytoplasm
932.	YJL110C	5	-4.7	transcriptional repressor, GZF3, negative regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
933.	YMR059W	4	-4.6	tRNA splicing endonuclease delta subunit, SEN15, tRNA splicing, tRNA-intron endonuclease activity, mitochondrial outer membrane
934.	YML098W	2	-4.6	TFIID subunit (TBP-associated factor), 19 kD, TAF13, transcription initiation from Pol II promoter, general RNA polymerase II transcription factor activity, nucleus
935.	YDR362C	6	-4.6	TFIIIC (transcription initiation factor) subunit, 91 kD, TFC6, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor TFIIIC complex
936.	YJL133W	2	-4.5	Protein of the mitochondrial carrier family (MCF) - unknown function, MRS3, transport, iron ion transporter activity, mitochondrion
937.	YGL243W	6	-4.5	tRNA-specific adenosine deaminase 1, TAD1, tRNA modification, tRNA specific adenosine deaminase activity, nucleus
938.	YLR107W	11	-4.5	RNA exonuclease, member of the family of 3^ -5^ exonucleases, REX3, RNA processing, 3'-5' exonuclease activity, cytoplasm
939.	YBL093C	1	-4.4	transcription factor, ROX3, transcription from Pol II promoter, RNA polymerase II transcription mediator activity, nucleus
940.	YPR186C	5	-4.4	TFIIIA (transcription initiation factor), PZF1, transcription initiation from Pol III promoter, RNA polymerase III transcription factor activity, transcription factor complex
941.	YDL017W	10	-4.3	protein kinase, CDC7, protein amino acid phosphorylation, protein serine/threonine kinase activity, nucleoplasm
942.	YOL017W	16	-4.3	similarity to YFR013w, ESC8, chromatin silencing, molecular_function unknown, nucleus
943.	YKL149C	3	-4.2	lariat-debranching enzyme, DBR1, RNA catabolism, RNA lariat debranching enzyme activity, nucleus
944.	YDL033C	11	-3.9	similarity to H.influenzae hypothetical protein HI0174, MTO2, biological_process unknown, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, mitochondrion
945.	YOR028C	2	-3.8	transcriptional activator, CIN5, regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
946.	YPR107C	3	-3.8	protein of the 3^ processing complex, YTH1, mRNA polyadenylylation, RNA binding, mRNA cleavage and polyadenylation specificity factor complex
947.	YDL151C	9	-3.6
948.	YGR044C	3	-3.4	zinc-finger transcription factor, RME1, meiosis, specific transcriptional repressor activity, nucleus
949.	YBL013W	17	-3.2	Methionyl-tRNA Transformylase, FMT1, translational initiation, methionyl-tRNA formyltransferase activity, mitochondrion
950.	YLR269C	4	-3.2
951.	YDR421W	26	-3.2	positive transcription regulator of ARO9 and ARO10, ARO80, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
952.	YGR288W	10	-3.2	maltose pathway regulatory protein, MAL13, regulation of transcription, DNA-dependent, transcription factor activity, nucleus
953.	YDL197C	23	-3.2	anti-silencing protein, ASF2, chromatin silencing at silent mating-type cassette (sensu Fungi), molecular_function unknown, nucleus
954.	YML043C	4	-3	RNA polymerase I specific transcription initiation factor, RRN11, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I transcription factor complex
955.	YBR257W	3	-3	involved in processing of tRNAs and rRNAs, POP4, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
956.	YLR014C	21	-2.9	transcription factor regulating pyrimidine pathway, PPR1, regulation of transcription, DNA-dependent, transcription factor activity, nucleus
957.	YBR237W	17	-2.9	pre-mRNA processing RNA-helicase, PRP5, U2-type nuclear mRNA branch site recognition, pre-mRNA splicing factor activity, spliceosome complex
958.	YPL047W	4	-2.8	weak similarity to A. thaliana genomic DNA, SGF11, biological_process unknown, molecular_function unknown, nucleus
959.	YPR005C	4	-2.8	salt-induced protein, HAL1, positive regulation of transcription from Pol II promoter, molecular_function unknown, cytoplasm
960.	YIR021W	6	-2.7	involved in mitochondrial RNA splicing of COB mRNA, MRS1, Group I intron splicing, RNA binding, mitochondrion
961.	YIR015W	4	-2.7	RNase P subunit, RPR2, tRNA processing, ribonuclease P activity, nucleolar ribonuclease P complex
962.	YOR213C	14	-2.7	subunit of the RSC complex, SAS5, chromatin silencing at telomere, H3/H4 histone acetyltransferase activity, nuclear chromatin
963.	YGL192W	2	-2.6	positive transcription factor for IME2, IME4, meiosis, mRNA methyltransferase activity, cellular_component unknown
964.	YOR295W	7	-2.6	subunit of RNA polymerase I transcription factor, UAF30, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I upstream activating factor complex
965.	YIL150C	23	-2.5	required for S-phase initiation or completion, MCM10, DNA replication initiation, chromatin binding, nucleus
966.	YPL002C	18	-2.5	involved in glucose derepression, SNF8, protein-vacuolar targeting, molecular_function unknown, ESCRT II complex
967.	YEL009C	11	-2.4	transcriptional activator of amino acid biosynthetic genes, GCN4, regulation of transcription from Pol II promoter, DNA binding, nucleus
968.	YOR178C	9	-2.4	ser/thr phosphoprotein phosphatase 1, regulatory chain, GAC1, meiosis, protein phosphatase type 1 activity, protein phosphatase type 1 complex
969.	YMR127C	12	-2.4	involved in silencing at HMR, SAS2, chromatin silencing at telomere, H3/H4 histone acetyltransferase activity, nuclear chromatin
970.	YOR338W	19	-2.4	similarity to YAL034c, biological_process unknown, molecular_function unknown, cellular_component unknown
971.	YDL170W	8	-2.4	transcriptional activator for GABA catabolic genes, UGA3, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
972.	YJL089W	25	-2.3	interacts with SNF1 protein kinase, SIP4, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
973.	YBR182C	9	-2.3	MADS-box transcription factor, SMP1, positive regulation of transcription from Pol II promoter, transcription factor activity, cytoplasm
974.	YOL028C	5	-2.3	involved in transcription activation, YAP7, positive regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
975.	YPR009W	25	-2.2	similarity to sterol uptake protein Sut1p, SUT2, regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
976.	YMR180C	14	-2.2	RNA 5^-triphosphatase with manganese- or cobalt-dependent NTPase activities, CTL1, RNA processing, polynucleotide 5'-phosphatase activity, cytoplasm
977.	YOR315W	3	-2.2	hypothetical protein, biological_process unknown, molecular_function unknown, cytoplasm
978.	YMR098C	8	-2.2	hypothetical protein, biological_process unknown, molecular_function unknown, mitochondrion
979.	YMR270C	4	-2.2	RNA polymerase I specific transcription initiation factor, RRN9, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I upstream activating factor complex
980.	YJL035C	2	-2.2	tRNA-specific adenosine deaminase 2, TAD2, tRNA modification, tRNA specific adenosine deaminase activity, cytoplasm
981.	YKL208W	1	-2.2	apo-cytochrome b pre-mRNA processing protein, CBT1, mRNA processing, molecular_function unknown, mitochondrion
982.	YOR172W	6	-2.1	Zn2-Cys6 zinc-finger transcription facto, YRM1, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, cytoplasm
983.	YIL056W	10	-2.1	similarity to YER064c, biological_process unknown, molecular_function unknown, cytoplasm
984.	YBL005W	8	-2	pleiotropic drug resistance regulatory protein, PDR3, regulation of transcription from Pol II promoter, DNA binding, cytoplasm
985.	YHR011W	5	-2	strong similarity to seryl-tRNA synthetases, DIA4, aerobic respiration, serine-tRNA ligase activity, cytoplasm
986.	YJL209W	21	-2	apo-cytochrome b pre-mRNA processing protein, CBP1, aerobic respiration, mRNA binding, mitochondrion
987.	YGL071W	4	-1.9	iron-regulated transcriptional repressor, RCS1, positive regulation of transcription from Pol II promoter, transcription factor activity, cytoplasm
988.	YLR316C	4	-1.9	subunit of tRNA-specific adenosine-34 deaminase, TAD3, tRNA modification, tRNA specific adenosine deaminase activity, cytoplasm
989.	YNL210W	1	-1.9	meiotic recombination protein, MER1, meiosis, pre-mRNA splicing factor activity, nucleus
990.	YPL205C	1	-1.9
991.	YNL299W	6	-1.9	nuclear division protein, TRF5, sister chromatid cohesion, DNA-directed DNA polymerase activity, nucleus
992.	YOR047C	7	-1.8	dosage-dependent modulator of glucose repression, STD1, regulation of transcription from Pol II promoter, protein kinase activator activity, nucleus
993.	YOR179C	1	-1.7	similarity to BRR5 protein, SYC1, transcription termination from Pol II promoter, poly(A)-independent, molecular_function unknown, nucleus
994.	YDR259C	2	-1.7	transcription factor, of a fungal-specific family of bzip proteins, YAP6, positive regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
995.	YBR050C	6	-1.6	regulatory subunit of type I protein phosphatase, REG2, negative regulation of transcription from Pol II promoter, protein phosphatase type 1 activity, protein phosphatase type 1 complex
996.	YOL001W	1	-1.6	cyclin, PHO80, regulation of phosphate metabolism, cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase holoenzyme complex
997.	YDR315C	4	-1.6	inositol 1, 3, 4, 5, 6-pentakisphosphate 2-kinase (IP5 2-kinase), IPK1, myo-inositol metabolism, inositol or phosphatidylinositol kinase activity, nucleus
998.	YNL025C	6	-1.5	DNA-directed RNA polymerase II holoenzyme and Kornberg^s mediator (SRB) subcomplex subunit, cyclin C homolog, SSN8, meiosis, general RNA polymerase II transcription factor activity, transcription factor complex
999.	YMR164C	4	-1.5	activator of STA1, STA2, and STA3, MSS11, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
1000.	YLR141W	7	-1.5	RNA polymerase I specific transcription initiation factor, RRN5, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I upstream activating factor complex
1001.	YLR266C	5	-1.5	weak similarity to transcription factors, PDR8, response to stress, DNA binding, nucleus
1002.	YPR199C	2	-1.5	involved in resistance to arsenic compounds, ARR1, positive regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
1003.	YMR030W	3	-1.5	respiration factor 1, RSF1, aerobic respiration, molecular_function unknown, nucleus
1004.	YNL296W	1	-1.5
1005.	YIR017C	4	-1.4	transcriptional activator of sulfur amino acid metabolism, MET28, regulation of transcription from Pol II promoter, DNA binding, nucleus
1006.	YLR136C	7	-1.4	tRNA-specific adenosine deaminase 3, TIS11, biological_process unknown, molecular_function unknown, cytoplasm
1007.	YLR204W	2	-1.4	weak similarity to YOR309c, QRI5, biological_process unknown, molecular_function unknown, mitochondrion
1008.	YOR135C	9	-1.3
1009.	YBL025W	2	-1.3	RNA polymerase I-specific transcription initiation factor, RRN10, transcription from Pol I promoter, RNA polymerase I transcription factor activity, RNA polymerase I upstream activating factor complex
1010.	YML027W	7	-1.3	homoeodomain protein, YOX1, negative regulation of transcription from Pol II promoter, mitotic, DNA binding, nucleus
1011.	YLR165C	4	-1.2	RNA:pseudouridine (Psi)-synthase, PUS5, rRNA modification, pseudouridylate synthase activity, mitochondrion
1012.	YIR018W	4	-1.2	involved in transcription activation, YAP5, positive regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
1013.	YDR478W	2	-1.2	RNA binding protein of RNase MRP, SNM1, rRNA processing, ribonuclease MRP activity, ribonuclease MRP complex
1014.	YAL068C	2	-1.1	strong similarity to subtelomeric encoded proteins, biological_process unknown, molecular_function unknown, cellular_component unknown
1015.	YBR167C	1	-1.1	nuclear RNase P subunit, POP7, rRNA processing, ribonuclease P activity, ribonuclease MRP complex
1016.	YCR018C	4	-1.1	nucleolar protein, SRD1, rRNA processing, molecular_function unknown, cytoplasm
1017.	YGL136C	2	-1.1	mitochondrial rRNA methyltransferase, MRM2, rRNA modification, rRNA (uridine-2'-O-)-methyltransferase activity, mitochondrion
1018.	YDR451C	4	-1.1	strong similarity to Yox1p, YHP1, negative regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nuclear chromosome
1019.	YOL108C	4	-1.1	basic helix-loop-helix transcription factor, INO4, positive regulation of transcription from Pol II promoter, specific RNA polymerase II transcription factor activity, nucleus
1020.	YCR097W	1	-0.3	mating type regulatory protein, silenced copy at HMR locus, HMRA1, regulation of transcription, mating-type specific, transcription corepressor activity, nucleus
1021.	YGL254W	1	-0.3	sulfite resistance protein, FZF1, positive regulation of transcription from Pol II promoter, transcription factor activity, nucleus
1022.	YBR240C	1	0	regulator of the thiamine biosynthetic genes, THI2, positive regulation of transcription from Pol II promoter, transcriptional activator activity, nucleus
1023.	YDR151C	1	0	strong similarity to CCCH zinc finger protein Tis11p, CTH1, transcription, transcription factor activity, nucleus
1024.	YCL066W	2	0	mating type regulatory protein, silenced copy at HML, HMLALPHA1, regulation of transcription from Pol II promoter, transcription coactivator activity, nucleus
1025.	YMR182C	1	0	transcriptional repressor protein, RGM1, negative regulation of transcription from Pol II promoter, RNA polymerase II transcription factor activity, nucleus
1026.	YKL043W	4	0	transcription factor, PHD1, pseudohyphal growth, specific RNA polymerase II transcription factor activity, nucleus
1027.	YCR040W	2	0	mating type regulatory protein, expressed copy at MAT locus, MATALPHA1, regulation of transcription from Pol II promoter, transcription coactivator activity, nucleus
1028.	YER035W	1	0	stimulates mRNA decapping, EDC2, deadenylylation-dependent decapping, RNA binding, cytoplasm
out of 1122

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